Xmipp
v3.23.11-Nereus
|
#include "xmippmodule.h"
#include "core/geometry.h"
#include "core/matrix2d.h"
#include "core/metadata_db.h"
#include "core/metadata_extension.h"
#include "core/metadata_sql.h"
#include "core/transformations.h"
#include "core/xmipp_image_generic.h"
#include "core/xmipp_image_extension.h"
#include "core/xmipp_color.h"
#include "data/fourier_filter.h"
#include "data/fourier_projection.h"
#include "data/projection.h"
#include "python_fourierprojector.h"
#include "python_filename.h"
#include "python_image.h"
#include "python_program.h"
#include "python_metadata.h"
#include "python_symmetry.h"
#include "reconstruction/ctf_estimate_from_micrograph.h"
#include "numpy/arrayobject.h"
Go to the source code of this file.
Macros | |
#define | FILTER_TRY() |
#define | FILTER_CATCH() |
#define | FILTER_TRY() |
#define | FILTER_CATCH() |
#define | INIT_TYPE(type) |
Functions | |
PyObject * | xmipp_str2Label (PyObject *obj, PyObject *args) |
PyObject * | xmipp_label2Str (PyObject *obj, PyObject *args) |
PyObject * | xmipp_colorStr (PyObject *obj, PyObject *args) |
PyObject * | xmipp_labelType (PyObject *obj, PyObject *args) |
PyObject * | xmipp_labelHasTag (PyObject *obj, PyObject *args) |
PyObject * | xmipp_labelIsImage (PyObject *obj, PyObject *args) |
PyObject * | xmipp_isValidLabel (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_createEmptyFile (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_getImageSize (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_MetaDataInfo (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_existsBlockInMetaDataFile (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_CheckImageFileSize (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_CheckImageCorners (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_ImgCompare (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_compareTwoFiles (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_bsoftRemoveLoopBlock (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_bsoftRestoreLoopBlock (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_compareTwoImageTolerance (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_readMetaDataWithTwoPossibleImages (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_substituteOriginalImages (PyObject *obj, PyObject *args, PyObject *kwargs) |
bool | validateInputImageString (PyObject *pyImage, PyObject *pyStrFn, FileName &fn) |
PyObject * | xmipp_compareTwoMetadataFiles (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_dumpToFile (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_Euler_angles2matrix (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_Euler_matrix2angles (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_Euler_direction (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_alignWithZ (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_activateMathExtensions (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_activateRegExtensions (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_fastEstimateEnhancedPSD (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_bandPassFilter (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_gaussianFilter (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_realGaussianFilter (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_badPixelFilter (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_errorBetween2CTFs (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_errorMaxFreqCTFs (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | xmipp_errorMaxFreqCTFs2D (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | Image_convertPSD (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | Image_align (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | Image_applyCTF (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyObject * | Image_projectVolumeDouble (PyObject *obj, PyObject *args, PyObject *kwargs) |
PyMODINIT_FUNC | PyInit_xmippLib (void) |
Variables | |
PyObject * | PyXmippError |
#define FILTER_CATCH | ( | ) |
Definition at line 966 of file xmippmodule.cpp.
#define FILTER_CATCH | ( | ) |
Definition at line 966 of file xmippmodule.cpp.
#define FILTER_TRY | ( | ) |
Some helper macros repeated in filter functions
Definition at line 956 of file xmippmodule.cpp.
#define FILTER_TRY | ( | ) |
Some helper macros repeated in filter functions
Definition at line 956 of file xmippmodule.cpp.
#define INIT_TYPE | ( | type | ) |
Definition at line 1442 of file xmippmodule.cpp.
PyObject* Image_align | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1195 of file xmippmodule.cpp.
PyObject* Image_applyCTF | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1236 of file xmippmodule.cpp.
PyObject* Image_convertPSD | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1169 of file xmippmodule.cpp.
PyObject* Image_projectVolumeDouble | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1290 of file xmippmodule.cpp.
PyMODINIT_FUNC PyInit_xmippLib | ( | void | ) |
Definition at line 1455 of file xmippmodule.cpp.
bool validateInputImageString | ( | PyObject * | pyImage, |
PyObject * | pyStrFn, | ||
FileName & | fn | ||
) |
Definition at line 663 of file xmippmodule.cpp.
PyObject* xmipp_activateMathExtensions | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 887 of file xmippmodule.cpp.
PyObject* xmipp_activateRegExtensions | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 905 of file xmippmodule.cpp.
PyObject* xmipp_alignWithZ | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 849 of file xmippmodule.cpp.
PyObject* xmipp_badPixelFilter | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1045 of file xmippmodule.cpp.
PyObject* xmipp_bandPassFilter | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 983 of file xmippmodule.cpp.
PyObject* xmipp_bsoftRemoveLoopBlock | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 459 of file xmippmodule.cpp.
PyObject* xmipp_bsoftRestoreLoopBlock | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 487 of file xmippmodule.cpp.
PyObject* xmipp_CheckImageCorners | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 370 of file xmippmodule.cpp.
PyObject* xmipp_CheckImageFileSize | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 344 of file xmippmodule.cpp.
PyObject* xmipp_colorStr | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 74 of file xmippmodule.cpp.
PyObject* xmipp_compareTwoFiles | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 427 of file xmippmodule.cpp.
PyObject* xmipp_compareTwoImageTolerance | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 514 of file xmippmodule.cpp.
PyObject* xmipp_compareTwoMetadataFiles | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 686 of file xmippmodule.cpp.
PyObject* xmipp_createEmptyFile | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 195 of file xmippmodule.cpp.
PyObject* xmipp_dumpToFile | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 753 of file xmippmodule.cpp.
PyObject* xmipp_errorBetween2CTFs | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1066 of file xmippmodule.cpp.
PyObject* xmipp_errorMaxFreqCTFs | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1105 of file xmippmodule.cpp.
PyObject* xmipp_errorMaxFreqCTFs2D | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1135 of file xmippmodule.cpp.
PyObject* xmipp_Euler_angles2matrix | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 773 of file xmippmodule.cpp.
PyObject* xmipp_Euler_direction | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 834 of file xmippmodule.cpp.
PyObject* xmipp_Euler_matrix2angles | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 795 of file xmippmodule.cpp.
PyObject* xmipp_existsBlockInMetaDataFile | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 312 of file xmippmodule.cpp.
PyObject* xmipp_fastEstimateEnhancedPSD | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 923 of file xmippmodule.cpp.
PyObject* xmipp_gaussianFilter | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1005 of file xmippmodule.cpp.
PyObject* xmipp_getImageSize | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 225 of file xmippmodule.cpp.
PyObject* xmipp_ImgCompare | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 396 of file xmippmodule.cpp.
PyObject* xmipp_isValidLabel | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 176 of file xmippmodule.cpp.
PyObject* xmipp_label2Str | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 62 of file xmippmodule.cpp.
PyObject* xmipp_labelHasTag | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 109 of file xmippmodule.cpp.
PyObject* xmipp_labelIsImage | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 145 of file xmippmodule.cpp.
PyObject* xmipp_labelType | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 88 of file xmippmodule.cpp.
PyObject* xmipp_MetaDataInfo | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 252 of file xmippmodule.cpp.
PyObject* xmipp_readMetaDataWithTwoPossibleImages | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 569 of file xmippmodule.cpp.
PyObject* xmipp_realGaussianFilter | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 1025 of file xmippmodule.cpp.
PyObject* xmipp_str2Label | ( | PyObject * | obj, |
PyObject * | args | ||
) |
Definition at line 53 of file xmippmodule.cpp.
PyObject* xmipp_substituteOriginalImages | ( | PyObject * | obj, |
PyObject * | args, | ||
PyObject * | kwargs | ||
) |
Definition at line 608 of file xmippmodule.cpp.
PyObject* PyXmippError |
Definition at line 47 of file xmippmodule.cpp.