metadata_extension.h

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/*
 * metadata_extension.h
 *
 *  Created on: May 12, 2010
 *      Author: roberto
 */

#ifndef CORE_METADATA_EXTENSION_H_
#define CORE_METADATA_EXTENSION_H_

#include "xmipp_filename.h"
#include "xmipp_image.h"
#include "metadata_vec.h"
#include "metadata_db.h"
#include <stdlib.h>
#include <fstream>
#include <iostream>
#include <sstream>
#include <string>

#define BLOCKROW 1
#define BLOCKCOLUNM 2
#define BLOCKMIXED 3
#define BLOCKDIFFERENCE 30

void getStatistics(const MetaData &md, Image<double> & _ave, Image<double> & _sd, bool apply_geo, bool wrap, MDLabel image_label=MDL_IMAGE);

void writeMdToStack(const MetaData &md, const FileName &fnStack, bool apply_geo, bool wrap, MDLabel image_label=MDL_IMAGE);

void getAverageApplyGeo(const MetaData &md, MultidimArray<double> & _ave, MDLabel image_label=MDL_IMAGE);

void getStatistics(const MetaData &md, double& _ave, double& _sd, double& _min,
        double& _max, bool apply_geo, MDLabel image_label=MDL_IMAGE);

void getFourierStatistics(MetaDataDb &MDin, double sam, MetaData &Mdout,
                          bool do_dpr, double max_sam, MDLabel image_label=MDL_IMAGE);

void getImageSize(const MetaData &md, size_t &Xdim, size_t &Ydim, size_t &Zdim, size_t &Ndim, MDLabel image_label=MDL_IMAGE);

void getImageInfo(const MetaData &md, size_t &Xdim, size_t &Ydim, size_t &Zdim, size_t &Ndim, DataType &datatype, MDLabel image_label=MDL_IMAGE);

void getImageInfo(const MetaData &md, ImageInfo &imgInfo, MDLabel image_label=MDL_IMAGE);

void getImageSizeFromFilename(const FileName &filename, size_t &Xdim, size_t &Ydim, size_t &Zdim, size_t &Ndim, MDLabel image_label=MDL_IMAGE);

bool compareImage(const FileName &filename1, const FileName &filename2);

bool compareImageSize(const FileName &filename1, const FileName &filename2);

bool compareTwoMetadataFiles(const FileName &fn1, const FileName &fn2);


int maxFileNameLength(const MetaData &md, MDLabel image_label=MDL_IMAGE);

void mpiSelectPart(MetaDataDb &md, int rank, int size, int &num_img_tot);

void readMetaDataWithTwoPossibleImages(const FileName &fn, MetaData &md);

void substituteOriginalImages(const FileName &fn, const FileName &fnOrig, const FileName &fnOut,
                              MDLabel label, bool skipFirstBlock);

void bsoftRemoveLoopBlock(const FileName &_inFile, const FileName &block);

void bsoftRestoreLoopBlock(const FileName &_inFile, const FileName &block);

Matrix2D<double> getMatrix(char* matrix);

MDRowVec firstRow(const FileName &fnMetadata);

#endif /* METADATA_EXTENSION_H_ */