#include "project_crystal.h"
#include "art_crystal.h"
#include <core/args.h>

Include dependency graph for project_crystal.cpp:

Macros
#define	CHANGE_COORDS_AND_CHOOSE_CORNERS2D

#define	x0 STARTINGX(visited)

#define	y0 STARTINGY(visited)

#define	xF FINISHINGX(visited)

#define	yF FINISHINGY(visited)

#define	i (int)YY(r)

#define	j (int)XX(r)

#define	INDEX(r) (int)YY(r),(int)XX(r)

Functions
void	project_crystal (Phantom &phantom, Projection &P, const ParametersProjection &prm, PROJECT_Side_Info &side, const Crystal_Projection_Parameters &prm_crystal, float rot, float tilt, float psi)

void	find_crystal_limits (const Matrix1D< double > &proj_corner1, const Matrix1D< double > &proj_corner2, const Matrix1D< double > &cell_corner1, const Matrix1D< double > &cell_corner2, const Matrix1D< double > &a, const Matrix1D< double > &b, int &iamin, int &iamax, int &ibmin, int &ibmax)

void	move_following_spiral (Matrix1D< double > &r, const MultidimArray< int > &visited)

void	fill_cell_positions (Projection &P, Matrix1D< double > &aproj, Matrix1D< double > &bproj, Matrix1D< double > &aprojd, Matrix1D< double > &bprojd, Matrix1D< double > &corner1, Matrix1D< double > &corner2, const Crystal_Projection_Parameters &prm_crystal, MultidimArray< double > &cell_shiftX, MultidimArray< double > &cell_shiftY, MultidimArray< double > &cell_shiftZ, MultidimArray< int > &cell_inside, MultidimArray< double > &exp_shifts_matrix_X, MultidimArray< double > &exp_shifts_matrix_Y, MultidimArray< double > &exp_shifts_matrix_Z)

void	init_shift_matrix (const Crystal_Projection_Parameters &prm_crystal, MultidimArray< int > &cell_inside, MultidimArray< double > &exp_shifts_matrix_X, MultidimArray< double > &exp_shifts_matrix_Y, MultidimArray< double > &exp_shifts_matrix_Z, MultidimArray< double > &exp_normal_shifts_matrix_X, MultidimArray< double > &exp_normal_shifts_matrix_Y, MultidimArray< double > &exp_normal_shifts_matrix_Z, double phantom_scale)

Variables
constexpr double	MIN_MODULE = 1e-2

Macro Definition Documentation

◆ CHANGE_COORDS_AND_CHOOSE_CORNERS2D

#define CHANGE_COORDS_AND_CHOOSE_CORNERS2D

Value:

M2x2_BY_V2x1(r,Ainv,r); \
    iamin=XMIPP_MIN(FLOOR(XX(r)),iamin); iamax=XMIPP_MAX(CEIL(XX(r)),iamax); \
    ibmin=XMIPP_MIN(FLOOR(YY(r)),ibmin); ibmax=XMIPP_MAX(CEIL(YY(r)),ibmax);