metadata_label.h

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/***************************************************************************
 *
 * Authors:     J.M. De la Rosa Trevin (jmdelarosa@cnb.csic.es)
 *              Jan Horacek (xhorace4@fi.muni.cz)
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef CORE_METADATALABEL_H
#define CORE_METADATALABEL_H

#include <map>
#include "xmipp_strings.h"
#include <vector>

class MDLabelData;
class MDObject;
class MDLabelStaticInit;

enum MDLabel
{
    MDL_UNDEFINED = -1,
    MDL_FIRST_LABEL, 
    MDL_OBJID = MDL_FIRST_LABEL, 
    MDL_GATHER_ID, 

    MDL_ANGLE_PSI, 
    MDL_ANGLE_PSI2, 
    MDL_ANGLE_PSI3, 
    MDL_ANGLE_PSI_DIFF, 
    MDL_ANGLE_ROT, 
    MDL_ANGLE_ROT2, 
    MDL_ANGLE_ROT3, 
    MDL_ANGLE_ROT_DIFF, 
    MDL_ANGLE_TILT, 
    MDL_ANGLE_TILT2, 
    MDL_ANGLE_TILT3, 
    MDL_ANGLE_TILT_DIFF, 
    MDL_ANGLE_DIFF0, 
    MDL_ANGLE_DIFF, 
    MDL_ANGLE_DIFF2, 
    MDL_ANGLE_Y,   
    MDL_ANGLE_Y2,   
    MDL_ANGLE_TEMPERATURE, 
    MDL_APPLY_SHIFT,
    MDL_AVG, 
    MDL_AVG_CHANGES_ORIENTATIONS, 
    MDL_AVG_CHANGES_OFFSETS, 
    MDL_AVG_CHANGES_CLASSES, 
    MDL_AVGPMAX, 
    MDL_BFACTOR, 
    MDL_BGMEAN, 
    MDL_BLOCK_NUMBER, 

    MDL_CL2D_CHANGES, 
    MDL_CL2D_SIMILARITY, 
    MDL_CLASS_COUNT, 
    MDL_CLASS_PERCENTAGE, 
    MDL_CLASSIFICATION_DATA, 
    MDL_CLASSIFICATION_DATA_SIZE, 
    MDL_CLASSIFICATION_DPR_05, 
    MDL_CLASSIFICATION_INTRACLASS_DISTANCE, 
    MDL_CLASSIFICATION_FRC_05, 
    MDL_COMMENT, 
    MDL_COORD_CONSENSUS_SCORE, 
    MDL_COST, 
    MDL_COST_PERCENTILE, 
    MDL_COUNT, 
    MDL_COUNT2, 
    MDL_CORR_DENOISED_PROJECTION, 
    MDL_CORR_DENOISED_NOISY, 

    MDL_CLASS_INTERSECTION_SIZE_PVALUE, 
    MDL_CLASS_INTERSECTION_RELATIVE_SIZE_PVALUE, 

    MDL_CRYSTAL_CELLX, 
    MDL_CRYSTAL_CELLY, 
    MDL_CRYSTAL_LATTICE_A,   
    MDL_CRYSTAL_LATTICE_B,   
    MDL_CRYSTAL_DISAPPEAR_THRE,   
    MDL_CRYSTAL_SHFILE,   
    MDL_CRYSTAL_ORTHO_PRJ,   
    MDL_CRYSTAL_PROJ,   
    MDL_CRYSTAL_SHIFTX, 
    MDL_CRYSTAL_SHIFTY, 
    MDL_CRYSTAL_SHIFTZ, 
    MDL_CRYSTAL_NOISE_SHIFT , 

    MDL_CONTINUOUS_X, 
    MDL_CONTINUOUS_Y, 
    MDL_CONTINUOUS_FLIP, 
    MDL_CONTINUOUS_GRAY_A, 
    MDL_CONTINUOUS_GRAY_B, 
    MDL_CONTINUOUS_SCALE_ANGLE, 
    MDL_CONTINUOUS_SCALE_X, 
    MDL_CONTINUOUS_SCALE_Y, 

    MDL_CORRELATION_IDX, 
    MDL_CORRELATION_MASK, 
    MDL_CORRELATION_WEIGHT, 

    MDL_CTF_DATA_PHASE_FLIPPED, // Is the Data Phase-Flippled?
    MDL_CTF_CORRECTED, // Is the CTF corrected?
    MDL_CTF_INPUTPARAMS, 
    MDL_CTF_MODEL, 
    MDL_CTF_MODEL2, 
    MDL_CTF_SAMPLING_RATE, 
    MDL_CTF_SAMPLING_RATE_Z, 
    MDL_CTF_VOLTAGE, 
    MDL_CTF_DEFOCUSA, 
    MDL_CTF_DEFOCUSU, 
    MDL_CTF_DEFOCUSV, 
    MDL_CTF_DEFOCUS_CHANGE, 
    MDL_CTF_DEFOCUS_R2, 
    MDL_CTF_DEFOCUS_COEFS, 
    MDL_CTF_DEFOCUS_RESIDUAL, 
    MDL_CTF_X0, 
    MDL_CTF_Y0, 
    MDL_CTF_XF, 
    MDL_CTF_YF, 
    MDL_CTF_DEFOCUS_PLANEUA, 
    MDL_CTF_DEFOCUS_PLANEUB, 
    MDL_CTF_DEFOCUS_PLANEUC, 
    MDL_CTF_DEFOCUS_PLANEVA, 
    MDL_CTF_DEFOCUS_PLANEVB, 
    MDL_CTF_DEFOCUS_PLANEVC, 
    MDL_CTF_DEFOCUS_ANGLE, 
    MDL_CTF_CS, 
    MDL_CTF_CA, 
    MDL_CTF_GROUP, 
    MDL_CTF_ENERGY_LOSS, 
    MDL_CTF_ENVELOPE, //<Envelope function
    MDL_CTF_ENVELOPE_PLOT, //<Envelope function
    MDL_CTF_LENS_STABILITY, 
    MDL_CTF_CONVERGENCE_CONE, 
    MDL_CTF_LONGITUDINAL_DISPLACEMENT, 
    MDL_CTF_TRANSVERSAL_DISPLACEMENT, 
    MDL_CTF_Q0, 
    MDL_CTF_K, 
    MDL_CTF_ENV_R0, 
    MDL_CTF_ENV_R1, 
    MDL_CTF_ENV_R2, 
    MDL_CTF_BG_GAUSSIAN_K, 
    MDL_CTF_BG_GAUSSIAN_SIGMAU, 
    MDL_CTF_BG_GAUSSIAN_SIGMAV, 
    MDL_CTF_BG_GAUSSIAN_CU, 
    MDL_CTF_BG_GAUSSIAN_CV, 
    MDL_CTF_BG_GAUSSIAN_ANGLE, 
    MDL_CTF_BG_SQRT_K, 
    MDL_CTF_BG_SQRT_U, 
    MDL_CTF_BG_SQRT_V, 
    MDL_CTF_BG_SQRT_ANGLE, 
    MDL_CTF_BG_BASELINE, 
    MDL_CTF_BG_GAUSSIAN2_K, 
    MDL_CTF_BG_GAUSSIAN2_SIGMAU, 
    MDL_CTF_BG_GAUSSIAN2_SIGMAV, 
    MDL_CTF_BG_GAUSSIAN2_CU, 
    MDL_CTF_BG_GAUSSIAN2_CV, 
    MDL_CTF_BG_GAUSSIAN2_ANGLE, 
    MDL_CTF_BG_R1, 
    MDL_CTF_BG_R2, 
    MDL_CTF_BG_R3, 
    MDL_CTF_CRIT_NONASTIGMATICVALIDITY, 
    MDL_CTF_CRIT_PSDCORRELATION90, 
    MDL_CTF_CRIT_FIRSTZERORATIO, 
    MDL_CTF_CRIT_FIRSTMINIMUM_FIRSTZERO_RATIO, 
    MDL_CTF_CRIT_FIRSTMINIMUM_FIRSTZERO_DIFF_RATIO, 
    MDL_CTF_CRIT_FIRSTZEROAVG, 
    MDL_CTF_CRIT_FIRSTZERODISAGREEMENT, 
    MDL_CTF_CRIT_MAXFREQ, 
    MDL_CTF_CRIT_DAMPING, 
    MDL_CTF_CRIT_PSDRADIALINTEGRAL, 
    MDL_CTF_CRIT_FITTINGSCORE, 
    MDL_CTF_CRIT_FITTINGCORR13, 
    MDL_CTF_CRIT_PSDVARIANCE, 
    MDL_CTF_CRIT_PSDPCA1VARIANCE, 
    MDL_CTF_CRIT_PSDPCARUNSTEST, 
    MDL_CTF_CRIT_NORMALITY, 
    MDL_CTF_CRIT_ICENESS, 
    MDL_CTF_DOWNSAMPLE_PERFORMED, 
    MDL_CTF_DIMENSIONS, // Size in pixels of the 3D PSF to be created (Xdim, Ydim, Zdim)
    MDL_CTF_LAMBDA, 
    MDL_CTF_XRAY_LENS_TYPE, 
    MDL_CTF_XRAY_OUTER_ZONE_WIDTH, 
    MDL_CTF_XRAY_ZONES_NUMBER, // Number of zones of the X-ray Fresnel lens
    MDL_CTF_PHASE_SHIFT,    //Volta Phase Plate phase shift
    MDL_CTF_VPP_RADIUS,    //Phase Plate radius
    MDL_CUMULATIVE_SSNR, 
    MDL_DATATYPE, 
    MDL_DEFGROUP, 
    MDL_DIMRED, 
    MDL_DIRECTION, 


    MDL_DM3_IDTAG,
    MDL_DM3_NODEID,
    MDL_DM3_NUMBER_TYPE,
    MDL_DM3_PARENTID,
    MDL_DM3_TAGCLASS,
    MDL_DM3_TAGNAME,
    MDL_DM3_SIZE,
    MDL_DM3_VALUE,
    MDL_DOSE, 

    //End of labels

    MDL_ENABLED, 

    MDL_DATE,// < timestamp (string)
    MDL_TIME,// <  time in seconds (double)

    MDL_FLIP, 
    MDL_FOM, 
    MDL_FRAME_ID, 
    MDL_GRAPH_DISTANCE2MAX, 
    MDL_GRAPH_DISTANCE2MAX_PREVIOUS, 
    MDL_GRAPH_CC, 
    MDL_GRAPH_CC_PREVIOUS, 
    MDL_HALF1, 
    MDL_HALF2, 
    MDL_IDX, 
    MDL_IMAGE, 
    MDL_IMAGE_COVARIANCE, 
    MDL_IMAGE_IDX, 
    MDL_IMAGE_ORIGINAL, 
    MDL_IMAGE_REF, 
    MDL_IMAGE_RESIDUAL, 
    MDL_IMAGE_TILTED, 
    MDL_IMED, 
    MDL_IMGMD, 
    MDL_IMAGE1, 
    MDL_IMAGE2, 
    MDL_IMAGE3, 
    MDL_IMAGE4, 
    MDL_IMAGE5, 
    MDL_INTSCALE, 
    MDL_ITEM_ID, 
    MDL_ITER, 
    MDL_KERDENSOM_FUNCTIONAL, 
    MDL_KERDENSOM_REGULARIZATION, 
    MDL_KERDENSOM_SIGMA, 
    MDL_KEYWORDS, 
    MDL_KMEANS2D_CENTROID, 
    MDL_KSTEST, 
    MDL_LL, 
    MDL_LOCAL_ALIGNMENT_PATCHES, 
    MDL_LOCAL_ALIGNMENT_COEFFS_X, 
    MDL_LOCAL_ALIGNMENT_COEFFS_Y, 
    MDL_LOCAL_ALIGNMENT_CONF_2_5_PERC, 
    MDL_LOCAL_ALIGNMENT_CONF_97_5_PERC, 
    MDL_LOCAL_ALIGNMENT_CONTROL_POINTS, 
    MDL_MAGNIFICATION, 
    MDL_MAPTOPOLOGY, 
    MDL_MASK, 
    MDL_MAXCC, 
    MDL_MAXCC_PERCENTILE, 
    MDL_MAX, 
    MDL_MAXCC_PREVIOUS, 
    MDL_MICROGRAPH, 
    MDL_MICROGRAPH_ID, 
    MDL_MICROGRAPH_MOVIE, 
    MDL_MICROGRAPH_MOVIE_ID, 
    MDL_MICROGRAPH_PARTICLES, 
    MDL_MICROGRAPH_ORIGINAL, 
    MDL_MICROGRAPH_TILTED, 
    MDL_MICROGRAPH_TILTED_ORIGINAL, 
    MDL_MIN, 
    MDL_MIRRORFRAC, 
    MDL_MISSINGREGION_NR, 
    MDL_MISSINGREGION_TYPE, 
    MDL_MISSINGREGION_THY0, 
    MDL_MISSINGREGION_THYF, 
    MDL_MISSINGREGION_THX0, 
    MDL_MISSINGREGION_THXF, 

    MDL_MLF_CTF,    
    MDL_MLF_WIENER, 
    MDL_MLF_SIGNAL, 
    MDL_MLF_NOISE,  

    MDL_MODELFRAC, 
    MDL_NEIGHBORS, 
    MDL_NEIGHBOR, 
    MDL_NEIGHBORHOOD_RADIUS, 
    MDL_NMA, 
    MDL_NMA_COLLECTIVITY, 
    MDL_NMA_ATOMSHIFT, 
    MDL_NMA_ENERGY, 
    MDL_NMA_MINRANGE, 
    MDL_NMA_MAXRANGE, 
    MDL_NMA_MODEFILE, 
    MDL_NMA_SCORE, 
    MDL_NMA_EIGENVAL, 
    MDL_NOISE_ANGLES, 
    MDL_NOISE_PARTICLE_COORD, 
    MDL_NOISE_COORD,  //Use instead of MDL_NOISE_PARTICLE_COORD in future
    MDL_NOISE_PIXEL_LEVEL, 
    MDL_ORDER, 
    MDL_ORIGIN_X, 
    MDL_ORIGIN_Y, 
    MDL_ORIGIN_Z, 

    MDL_OPTICALFLOW_MEANX, 
    MDL_OPTICALFLOW_MEANY, 
    MDL_OPTICALFLOW_STDX, 
    MDL_OPTICALFLOW_STDY, 

    MDL_PARTICLE_ID, 
    MDL_PHANTOM_BGDENSITY, 
    MDL_PHANTOM_FEATURE_CENTER, 
    MDL_PHANTOM_FEATURE_DENSITY, 
    MDL_PHANTOM_FEATURE_OPERATION, 
    MDL_PHANTOM_FEATURE_SPECIFIC, 
    MDL_PHANTOM_FEATURE_TYPE, 
    MDL_PHANTOM_SCALE, 

    MDL_MACRO_CMD, //ImageJ macro command on picker
    MDL_MACRO_CMD_ARGS, //ImageJ macro args on picker
    MDL_COLOR, 
    MDL_PICKING_TEMPLATES, 
    MDL_PICKING_STATE, 
    MDL_PICKING_MICROGRAPH_STATE, 
    MDL_PICKING_AUTOPICKPERCENT,
    MDL_PICKING_PARTICLE_SIZE, 
    MDL_PICKING_AUTOPARTICLES_SIZE, 
    MDL_PICKING_MANUALPARTICLES_SIZE, 
    MDL_PMAX, 
    MDL_POINTSASYMETRICUNIT, 

    MDL_PRJ_DIMENSIONS, // X,Y dimensions for the generated projections
    MDL_PRJ_ANGFILE,  
    MDL_PRJ_PSI_NOISE,  
    MDL_PRJ_PSI_RANDSTR, 
    MDL_PRJ_PSI_RANGE,  
    MDL_PRJ_ROT_NOISE ,  
    MDL_PRJ_ROT_RANDSTR,  
    MDL_PRJ_ROT_RANGE,
    MDL_PRJ_TILT_NOISE,  
    MDL_PRJ_TILT_RANDSTR,  
    MDL_PRJ_TILT_RANGE, // Vector with the initial and final tilt angle values, and step size
    MDL_PRJ_VOL,        // Volume file name to generate projections from

    MDL_PROGRAM,// <  program name
    MDL_USER,// <  user name

    MDL_DIMENSIONS_3D,  // X,Y,Z dimensions
    MDL_DIMENSIONS_2D,  // X,Y dimensions
    MDL_PSD, 
    MDL_PSD_ENHANCED, 
    MDL_RANDOMSEED, 
    MDL_REF3D, 
    MDL_REF, 
    MDL_REF2, 
    MDL_REFMD, 
    MDL_ASSIGNED_DIR_REF_CC, 

    MDL_RESIDUE,        //<residue of an atomic model (int)
    MDL_RESOLUTION_ANISOTROPY, 
    MDL_RESOLUTION_DPR, 
    MDL_RESOLUTION_ERRORL2, 
    MDL_RESOLUTION_FRC, 
    MDL_RESOLUTION_FRCRANDOMNOISE, 
    MDL_RESOLUTION_FREQ, 
    MDL_RESOLUTION_FREQ2, 
    MDL_RESOLUTION_FREQREAL, 
    MDL_RESOLUTION_FSO, 
    MDL_RESOLUTION_LOCAL_RESIDUE, 
    MDL_RESOLUTION_LOG_STRUCTURE_FACTOR, 
    MDL_RESOLUTION_SSNR, 
    MDL_RESOLUTION_STRUCTURE_FACTOR, 
    MDL_RESOLUTION_RFACTOR, 

    MDL_SAMPLINGRATE, 
    MDL_SAMPLINGRATE_ORIGINAL, 
    MDL_SAMPLINGRATE_X, 
    MDL_SAMPLINGRATE_Y, 
    MDL_SAMPLINGRATE_Z, 

    MDL_SCALE, 
    MDL_SCORE_BY_PCA_RESIDUAL_PROJ,
    MDL_SCORE_BY_PCA_RESIDUAL_EXP,
    MDL_SCORE_BY_PCA_RESIDUAL,
    MDL_SCORE_BY_ALIGNABILITY, 
    MDL_SCORE_BY_ALIGNABILITY_PRECISION, 
    MDL_SCORE_BY_ALIGNABILITY_ACCURACY, 
    MDL_SCORE_BY_ALIGNABILITY_PRECISION_EXP, 
    MDL_SCORE_BY_ALIGNABILITY_PRECISION_REF, 
    MDL_SCORE_BY_ALIGNABILITY_ACCURACY_EXP, 
    MDL_SCORE_BY_ALIGNABILITY_ACCURACY_REF, 
    MDL_SCORE_BY_ALIGNABILITY_NOISE, 
    MDL_SCORE_BY_EMPTINESS, 
    MDL_SCORE_BY_ENTROPY,  
    MDL_SCORE_BY_GRANULO,  
    MDL_SCORE_BY_HISTDIST,  
    MDL_SCORE_BY_LBP,  
    MDL_SCORE_BY_MIRROR, 
    MDL_SCORE_BY_RAMP,  
    MDL_SCORE_BY_SCREENING, 
    MDL_SCORE_BY_VARIANCE,  
    MDL_SCORE_BY_VAR, 
    MDL_SCORE_BY_GINI, 
    MDL_SCORE_BY_ZERNIKE,  
    MDL_SCORE_BY_ZSCORE,
    MDL_SELFILE, 
    MDL_SERIE, 
    MDL_SHIFT_X, 
    MDL_SHIFT_X2, 
    MDL_SHIFT_X3, 
    MDL_SHIFT_X_DIFF, 
    MDL_SHIFT_Y, 
    MDL_SHIFT_Y2, 
    MDL_SHIFT_Y3, 
    MDL_SHIFT_Y_DIFF, 
    MDL_SHIFT_Z, 
    MDL_SHIFT_Z2, 
    MDL_SHIFT_Z3, 
    MDL_SHIFT_DIFF0, 
    MDL_SHIFT_DIFF, 
    MDL_SHIFT_DIFF2, 
    MDL_SIGMANOISE, 
    MDL_SIGMAOFFSET, 
    MDL_SIGNALCHANGE, 
    MDL_SPH_COEFFICIENTS, 
    MDL_SPH_DEFORMATION, 
    MDL_SPH_TSNE_COEFF1D, 
    MDL_SPH_TSNE_COEFF2D, 
    MDL_STDDEV, 
    MDL_STAR_COMMENT, 
    MDL_SUBTRACTION_R2, 
    MDL_SUBTRACTION_BETA0, 
    MDL_SUBTRACTION_BETA1, 
    MDL_SUM, 
    MDL_SUMWEIGHT, 
    MDL_SYMNO, 
    MDL_TOMOGRAM_VOLUME, 
    MDL_TOMOGRAMMD, 
    MDL_TRANSFORM_MATRIX, 
    MDL_TSID, 

    MDL_TEST_SIZE,// < number of test assigned to a program
    MDL_TILT_ANALYSIS_MEAN, // <Mean correlation between the PSD segments of a micrograph
    MDL_TILT_ANALYSIS_STD, // <STD correlation between the PSD segments of a micrograph
    MDL_TILT_ANALYSIS_MIN, // <Min correlation between the PSD segments of a micrograph
    MDL_TILT_ANALYSIS_MAX, // <Max correlation between the PSD segments of a micrograph
    MDL_TILT_ANALYSIS_PSDs, // <Image composed of the PSDs of each segment of a micrograph

    MDL_VOLUME_SCORE_SUM, 
    MDL_VOLUME_SCORE_SUM_TH, 
    MDL_VOLUME_SCORE_MEAN, 
    MDL_VOLUME_SCORE_MIN, 
    MDL_VOLUME_SCORE1,
    MDL_VOLUME_SCORE2,
    MDL_VOLUME_SCORE3,
    MDL_VOLUME_SCORE4,
    MDL_WEIGHT, 
    MDL_WEIGHT_P, 
    MDL_WEIGHT_CONTINUOUS2, 
    MDL_WEIGHT_JUMPER0, 
    MDL_WEIGHT_JUMPER, 
    MDL_WEIGHT_JUMPER2, 
    MDL_WEIGHT_REALCORR, 
    MDL_WEIGHT_PHASECORR, 
    MDL_WEIGHT_SIGNIFICANT, 
    MDL_WEIGHT_SSNR, 
    MDL_WEIGHT_PRECISION_ALIGNABILITY, 
    MDL_WEIGHT_ALIGNABILITY, 
    MDL_WEIGHT_ACCURACY_ALIGNABILITY, 
    MDL_WEIGHT_PRECISION_MIRROR, 
    MDL_WROBUST, 
    MDL_X, 
    MDL_XCOOR, 
    MDL_XCOOR_TILT, 
    MDL_XSIZE, 
    MDL_Y, 
    MDL_YCOOR, 
    MDL_YCOOR_TILT, 
    MDL_YSIZE, 
    MDL_Z, 
    MDL_ZCOOR, 
    MDL_ZSCORE, 
    MDL_ZSCORE_DEEPLEARNING1, 
    MDL_GOOD_REGION_SCORE, 
    MDL_ZSCORE_HISTOGRAM, 
    MDL_ZSCORE_RESMEAN, 
    MDL_ZSCORE_RESVAR, 
    MDL_ZSCORE_RESCOV, 
    MDL_ZSCORE_SHAPE1, 
    MDL_ZSCORE_SHAPE2, 
    MDL_ZSCORE_SNR1, 
    MDL_ZSCORE_SNR2, 
    MDL_ZSIZE, 

    RLN_AREA_ID, 
    RLN_AREA_NAME, 
    RLN_COMMENT, // The RLN_COMMENT is handled specially as well

    RLN_CTF_BFACTOR, 
    RLN_CTF_SCALEFACTOR, 
    RLN_CTF_SAMPLING_RATE, 
    RLN_CTF_VOLTAGE, 
    RLN_CTF_DEFOCUSU, 
    RLN_CTF_DEFOCUSV, 
    RLN_CTF_DEFOCUS_ANGLE, 
    RLN_CTF_CS, 
    RLN_CTF_CA, 
    RLN_CTF_DETECTOR_PIXEL_SIZE, 
    RLN_CTF_ENERGY_LOSS, 
    RLN_CTF_FOM, 
    RLN_CTF_IMAGE, 
    RLN_CTF_LENS_STABILITY, 
    RLN_CTF_MAGNIFICATION, 
    RLN_CTF_MAXRES, 
    RLN_CTF_CONVERGENCE_CONE, 
    RLN_CTF_LONGITUDINAL_DISPLACEMENT, 
    RLN_CTF_TRANSVERSAL_DISPLACEMENT, 
    RLN_CTF_Q0, 
    RLN_CTF_K, 
    RLN_CTF_VALUE, 
    RLN_CTF_VALIDATIONSCORE, 
    RLN_CTF_PHASESHIFT, 

    RLN_IMAGE_NAME,
    RLN_IMAGE_RECONSTRUCT_NAME,
    RLN_IMAGE_ID,
    RLN_IMAGE_ENABLED,
    RLN_IMAGE_DATATYPE,
    RLN_IMAGE_DIMENSIONALITY,
    RLN_IMAGE_BEAMTILT_X,
    RLN_IMAGE_BEAMTILT_Y,
    RLN_IMAGE_BEAMTILT_GROUP,
    RLN_IMAGE_COORD_X,
    RLN_IMAGE_COORD_Y,
    RLN_IMAGE_COORD_Z,
    RLN_IMAGE_FRAME_NR,
    RLN_IMAGE_MAGNIFICATION_CORRECTION,
    RLN_IMAGE_NORM_CORRECTION,
    RLN_IMAGE_ORI_NAME,
    RLN_IMAGE_SAMPLINGRATE,
    RLN_IMAGE_SAMPLINGRATE_X,
    RLN_IMAGE_SAMPLINGRATE_Y,
    RLN_IMAGE_SAMPLINGRATE_Z,
    RLN_IMAGE_SIZE,
    RLN_IMAGE_SIZEX,
    RLN_IMAGE_SIZEY,
    RLN_IMAGE_SIZEZ,
    RLN_IMAGE_STATS_MIN,
    RLN_IMAGE_STATS_MAX,
    RLN_IMAGE_STATS_AVG,
    RLN_IMAGE_STATS_STDDEV,
    RLN_IMAGE_STATS_SKEW,
    RLN_IMAGE_STATS_KURT,
    RLN_IMAGE_WEIGHT,

    RLN_MASK_NAME,

    RLN_MATRIX_1_1,
    RLN_MATRIX_1_2,
    RLN_MATRIX_1_3,
    RLN_MATRIX_2_1,
    RLN_MATRIX_2_2,
    RLN_MATRIX_2_3,
    RLN_MATRIX_3_1,
    RLN_MATRIX_3_2,
    RLN_MATRIX_3_3,

    RLN_MICROGRAPH_ID,
    RLN_MICROGRAPH_MOVIE_NAME,
    RLN_MICROGRAPH_NAME,
    RLN_MICROGRAPH_NAME_WODOSE,
    RLN_MICROGRAPH_TILT_ANGLE,
    RLN_MICROGRAPH_TILT_AXIS_DIRECTION,
    RLN_MICROGRAPH_TILT_AXIS_OUTOFPLANE,

    RLN_MLMODEL_ACCURACY_ROT,
    RLN_MLMODEL_ACCURACY_TRANS,
    RLN_MLMODEL_AVE_PMAX,
    RLN_MLMODEL_CURRENT_RESOLUTION,
    RLN_MLMODEL_CURRENT_SIZE,
    RLN_MLMODEL_DATA_VS_PRIOR_REF,
    RLN_MLMODEL_DIMENSIONALITY,
    RLN_MLMODEL_DIMENSIONALITY_DATA,
    RLN_MLMODEL_DIFF2_HALVES_REF,
    RLN_MLMODEL_ESTIM_RESOL_REF,
    RLN_MLMODEL_FOURIER_COVERAGE_REF,
    RLN_MLMODEL_FOURIER_COVERAGE_TOTAL_REF,
    RLN_MLMODEL_FSC_HALVES_REF,
    RLN_MLMODEL_GROUP_NAME,
    RLN_MLMODEL_GROUP_NO,
    RLN_MLMODEL_GROUP_NR_PARTICLES,
    RLN_MLMODEL_GROUP_SCALE_CORRECTION,
    RLN_MLMODEL_HELICAL_NR_ASU,
    RLN_MLMODEL_HELICAL_TWIST,
    RLN_MLMODEL_HELICAL_TWIST_MIN,
    RLN_MLMODEL_HELICAL_TWIST_MAX,
    RLN_MLMODEL_HELICAL_TWIST_INITIAL_STEP,
    RLN_MLMODEL_HELICAL_RISE,
    RLN_MLMODEL_HELICAL_RISE_MIN,
    RLN_MLMODEL_HELICAL_RISE_MAX,
    RLN_MLMODEL_HELICAL_RISE_INITIAL_STEP,
    RLN_MLMODEL_IS_HELIX,
    RLN_MLMODEL_INTERPOLATOR,
    RLN_MLMODEL_LL,
    RLN_MLMODEL_MINIMUM_RADIUS_NN_INTERPOLATION,
    RLN_MLMODEL_NORM_CORRECTION_AVG,
    RLN_MLMODEL_NR_BODIES,
    RLN_MLMODEL_NR_CLASSES,
    RLN_MLMODEL_NR_GROUPS,
    RLN_MLMODEL_ORIGINAL_SIZE,
    RLN_MLMODEL_ORIENTABILITY_CONTRIBUTION,
    RLN_MLMODEL_PADDING_FACTOR,
    RLN_MLMODEL_PDF_CLASS,
    RLN_MLMODEL_PRIOR_OFFX_CLASS,
    RLN_MLMODEL_PRIOR_OFFY_CLASS,
    RLN_MLMODEL_PDF_ORIENT,
    RLN_MLMODEL_PIXEL_SIZE,
    RLN_MLMODEL_POWER_REF,
    RLN_MLMODEL_PRIOR_MODE,
    RLN_MLMODEL_SGD_GRADIENT_IMAGE,
    RLN_MLMODEL_SIGMA_OFFSET,
    RLN_MLMODEL_SIGMA_ROT,
    RLN_MLMODEL_SIGMA_TILT,
    RLN_MLMODEL_SIGMA_PSI,
    RLN_MLMODEL_REF_IMAGE,
    RLN_MLMODEL_SIGMA2_NOISE,
    RLN_MLMODEL_SIGMA2_REF,
    RLN_MLMODEL_SSNR_REF,
    RLN_MLMODEL_TAU2_FUDGE_FACTOR,
    RLN_MLMODEL_TAU2_REF,

    RLN_OPTIMISER_ACCURACY_ROT,
    RLN_OPTIMISER_ACCURACY_TRANS,
    RLN_OPTIMISER_ADAPTIVE_FRACTION,
    RLN_OPTIMISER_ADAPTIVE_OVERSAMPLING,
    RLN_OPTIMISER_AUTO_LOCAL_HP_ORDER,
    RLN_OPTIMISER_AVAILABLE_MEMORY,
    RLN_OPTIMISER_BEST_RESOL_THUS_FAR,
    RLN_OPTIMISER_CHANGES_OPTIMAL_OFFSETS,
    RLN_OPTIMISER_CHANGES_OPTIMAL_ORIENTS,
    RLN_OPTIMISER_CHANGES_OPTIMAL_CLASSES,
    RLN_OPTIMISER_COARSE_SIZE,
    RLN_OPTIMISER_DATA_ARE_CTF_PHASE_FLIPPED,
    RLN_OPTIMISER_DATA_ARE_CTF_PREMULTIPLIED,
    RLN_OPTIMISER_DATA_STARFILE,
    RLN_OPTIMISER_DO_AUTO_REFINE,
    RLN_OPTIMISER_DO_ONLY_FLIP_CTF_PHASES,
    RLN_OPTIMISER_DO_CORRECT_CTF,
    RLN_OPTIMISER_DO_CORRECT_MAGNIFICATION,
    RLN_OPTIMISER_DO_CORRECT_NORM,
    RLN_OPTIMISER_DO_CORRECT_SCALE,
    RLN_OPTIMISER_DO_HELICAL_REFINE,
    RLN_OPTIMISER_DO_REALIGN_MOVIES,
    RLN_OPTIMISER_DO_MAP,
    RLN_OPTIMISER_DO_SGD,
    RLN_OPTIMISER_DO_SOLVENT_FLATTEN,
    RLN_OPTIMISER_DO_SKIP_ALIGN,
    RLN_OPTIMISER_DO_SKIP_ROTATE,
    RLN_OPTIMISER_DO_SPLIT_RANDOM_HALVES,
    RLN_OPTIMISER_DO_ZERO_MASK,
    RLN_OPTIMISER_FIX_SIGMA_NOISE,
    RLN_OPTIMISER_FIX_SIGMA_OFFSET,
    RLN_OPTIMISER_FIX_TAU,
    RLN_OPTIMISER_HAS_CONVERGED,
    RLN_OPTIMISER_HAS_HIGH_FSC_AT_LIMIT,
    RLN_OPTIMISER_HAS_LARGE_INCR_SIZE_ITER_AGO,
    RLN_OPTIMISER_HELICAL_TWIST_INITIAL,
    RLN_OPTIMISER_HELICAL_RISE_INITIAL,
    RLN_OPTIMISER_HELICAL_Z_PERCENTAGE,
    RLN_OPTIMISER_HELICAL_TUBE_INNER_DIAMETER,
    RLN_OPTIMISER_HELICAL_TUBE_OUTER_DIAMETER,
    RLN_OPTIMISER_HELICAL_SYMMETRY_LOCAL_REFINEMENT,
    RLN_OPTIMISER_HELICAL_SIGMA_DISTANCE,
    RLN_OPTIMISER_HIGHRES_LIMIT_SGD,
    RLN_OPTIMISER_IGNORE_HELICAL_SYMMETRY,
    RLN_OPTIMISER_HELICAL_KEEP_TILT_PRIOR_FIXED,
    RLN_OPTIMISER_HIGHRES_LIMIT_EXP,
    RLN_OPTIMISER_IGNORE_CTF_UNTIL_FIRST_PEAK,
    RLN_OPTIMISER_INCR_SIZE,
    RLN_OPTIMISER_ITERATION_NO,
    RLN_OPTIMISER_LOCAL_SYMMETRY_FILENAME,
    RLN_OPTIMISER_LOWRES_JOIN_RANDOM_HALVES,
    RLN_OPTIMISER_MAGNIFICATION_RANGE,
    RLN_OPTIMISER_MAGNIFICATION_STEP,
    RLN_OPTIMISER_MAX_COARSE_SIZE,
    RLN_OPTIMISER_MAX_NR_POOL,
    RLN_OPTIMISER_MODEL_STARFILE,
    RLN_OPTIMISER_MODEL_STARFILE2,
    RLN_OPTIMISER_NR_ITERATIONS,
    RLN_OPTIMISER_NR_ITER_WO_RESOL_GAIN,
    RLN_OPTIMISER_NR_ITER_WO_HIDDEN_VAR_CHANGES,
    RLN_OPTIMISER_OUTPUT_ROOTNAME,
    RLN_OPTIMISER_PARTICLE_DIAMETER,
    RLN_OPTIMISER_RADIUS_MASK_3D_MAP,
    RLN_OPTIMISER_RADIUS_MASK_EXP_PARTICLES,
    RLN_OPTIMISER_RANDOM_SEED,
    RLN_OPTIMISER_REFS_ARE_CTF_CORRECTED,
    RLN_OPTIMISER_SAMPLING_STARFILE,
    RLN_OPTIMISER_SGD_MU,
    RLN_OPTIMISER_SGD_SIGMA2FUDGE_INI,
    RLN_OPTIMISER_SGD_SIGMA2FUDGE_HALFLIFE,
    RLN_OPTIMISER_SGD_SUBSET_START,
    RLN_OPTIMISER_SGD_SUBSET_SIZE,
    RLN_OPTIMISER_SGD_WRITE_EVERY_SUBSET,
    RLN_OPTIMISER_SGD_MAX_SUBSETS,
    RLN_OPTIMISER_SGD_STEPSIZE,
    RLN_OPTIMISER_SMALLEST_CHANGES_OPT_CLASSES,
    RLN_OPTIMISER_SMALLEST_CHANGES_OPT_OFFSETS,
    RLN_OPTIMISER_SMALLEST_CHANGES_OPT_ORIENTS,
    RLN_OPTIMISER_SOLVENT_MASK_NAME,
    RLN_OPTIMISER_SOLVENT_MASK2_NAME,
    RLN_OPTIMISER_TAU_SPECTRUM_NAME,
    RLN_OPTIMISER_USE_TOO_COARSE_SAMPLING,
    RLN_OPTIMISER_WIDTH_MASK_EDGE,

    RLN_ORIENT_FLIP,
    RLN_ORIENT_ID,
    RLN_ORIENT_ORIGIN_X,
    RLN_ORIENT_ORIGIN_X_PRIOR,
    RLN_ORIENT_ORIGIN_Y,
    RLN_ORIENT_ORIGIN_Y_PRIOR,
    RLN_ORIENT_ORIGIN_Z,
    RLN_ORIENT_ORIGIN_Z_PRIOR,
    RLN_ORIENT_ROT,
    RLN_ORIENT_ROT_PRIOR,
    RLN_ORIENT_TILT,
    RLN_ORIENT_TILT_PRIOR,
    RLN_ORIENT_PSI,
    RLN_ORIENT_PSI_PRIOR,
    RLN_ORIENT_PSI_PRIOR_FLIP_RATIO,

    RLN_PARTICLE_AUTOPICK_FOM,
    RLN_PARTICLE_CLASS,
    RLN_PARTICLE_DLL,
    RLN_PARTICLE_ID,
    RLN_PARTICLE_FOM,
    RLN_PARTICLE_KL_DIVERGENCE,
    RLN_PARTICLE_MOVIE_RUNNING_AVG,
    RLN_PARTICLE_RANDOM_SUBSET,
    RLN_PARTICLE_NAME,
    RLN_PARTICLE_ORI_NAME,
    RLN_PARTICLE_NR_SIGNIFICANT_SAMPLES,
    RLN_PARTICLE_NR_FRAMES,
    RLN_PARTICLE_NR_FRAMES_AVG,

    RLN_PARTICLE_PMAX,

    RLN_PARTICLE_HELICAL_TUBE_ID,
    RLN_PARTICLE_HELICAL_TUBE_PITCH,
    RLN_PARTICLE_HELICAL_TRACK_LENGTH,

    RLN_PIPELINE_JOB_COUNTER,
    RLN_PIPELINE_NODE_NAME,
    RLN_PIPELINE_NODE_TYPE,
    RLN_PIPELINE_PROCESS_ALIAS,
    RLN_PIPELINE_PROCESS_NAME,
    RLN_PIPELINE_PROCESS_TYPE,
    RLN_PIPELINE_PROCESS_STATUS,
    RLN_PIPELINE_EDGE_FROM,
    RLN_PIPELINE_EDGE_TO,
    RLN_PIPELINE_EDGE_PROCESS,

    RLN_POSTPROCESS_AMPLCORR_MASKED,
    RLN_POSTPROCESS_AMPLCORR_UNMASKED,
    RLN_POSTPROCESS_BFACTOR,
    RLN_POSTPROCESS_DPR_MASKED,
    RLN_POSTPROCESS_DPR_UNMASKED,
    RLN_POSTPROCESS_FINAL_RESOLUTION,
    RLN_POSTPROCESS_FSC_GENERAL,
    RLN_POSTPROCESS_FSC_TRUE,
    RLN_POSTPROCESS_FSC_MASKED,
    RLN_POSTPROCESS_FSC_UNMASKED,
    RLN_POSTPROCESS_FSC_RANDOM_MASKED,
    RLN_POSTPROCESS_GUINIER_FIT_CORRELATION,
    RLN_POSTPROCESS_GUINIER_FIT_INTERCEPT,
    RLN_POSTPROCESS_GUINIER_FIT_SLOPE,
    RLN_POSTPROCESS_GUINIER_VALUE_IN,
    RLN_POSTPROCESS_GUINIER_VALUE_INVMTF,
    RLN_POSTPROCESS_GUINIER_VALUE_WEIGHTED,
    RLN_POSTPROCESS_GUINIER_VALUE_SHARPENED,
    RLN_POSTPROCESS_GUINIER_VALUE_INTERCEPT,
    RLN_POSTPROCESS_GUINIER_RESOL_SQUARED,
    RLN_POSTPROCESS_MTF_VALUE, 

    RLN_SAMPLING_IS_3D,
    RLN_SAMPLING_IS_3D_TRANS,
    RLN_SAMPLING_HEALPIX_ORDER,
    RLN_SAMPLING_HELICAL_OFFSET_STEP,
    RLN_SAMPLING_LIMIT_TILT,
    RLN_SAMPLING_OFFSET_RANGE,
    RLN_SAMPLING_OFFSET_STEP,
    RLN_SAMPLING_PERTURB,
    RLN_SAMPLING_PERTURBATION_FACTOR,
    RLN_SAMPLING_PRIOR_MODE,
    RLN_SAMPLING_PSI_STEP,
    RLN_SAMPLING_SIGMA_ROT,
    RLN_SAMPLING_SIGMA_TILT,
    RLN_SAMPLING_SIGMA_PSI,
    RLN_SAMPLING_SYMMETRY,

    RLN_SELECTED,
    RLN_SELECT_PARTICLES_ZSCORE,
    RLN_SORTED_IDX,
    RLN_STARFILE_MOVIE_PARTICLES,
    RLN_PERFRAME_CUMULATIVE_WEIGHT,
    RLN_PERFRAME_RELATIVE_WEIGHT,

    RLN_RESOLUTION,
    RLN_RESOLUTION_ANGSTROM,
    RLN_RESOLUTION_INVPIXEL,
    RLN_SPECTRAL_IDX,

    BUFFER_LABELS_START,
    BUFFER_01,
    BUFFER_02,
    BUFFER_03,
    BUFFER_04,
    BUFFER_05,
    BUFFER_06,
    BUFFER_07,
    BUFFER_08,
    BUFFER_09,
    BUFFER_10,
    BUFFER_11,
    BUFFER_12,
    BUFFER_13,
    BUFFER_14,
    BUFFER_15,
    BUFFER_16,
    BUFFER_17,
    BUFFER_18,
    BUFFER_19,
    BUFFER_20,
    BUFFER_21,
    BUFFER_22,
    BUFFER_23,
    BUFFER_24,
    BUFFER_25,
    BUFFER_26,
    BUFFER_27,
    BUFFER_28,
    BUFFER_29,
    BUFFER_30,
    BUFFER_31,
    BUFFER_32,
    BUFFER_33,
    BUFFER_34,
    BUFFER_35,
    BUFFER_36,
    BUFFER_37,
    BUFFER_38,
    BUFFER_39,
    BUFFER_40,
    BUFFER_41,
    BUFFER_42,
    BUFFER_43,
    BUFFER_44,
    BUFFER_45,
    BUFFER_46,
    BUFFER_47,
    BUFFER_48,
    BUFFER_49,
    BUFFER_50,
    BUFFER_51,
    BUFFER_52,
    BUFFER_53,
    BUFFER_54,
    BUFFER_55,
    BUFFER_56,
    BUFFER_57,
    BUFFER_58,
    BUFFER_59,
    BUFFER_60,
    BUFFER_61,
    BUFFER_62,
    BUFFER_63,
    BUFFER_64,
    BUFFER_65,
    BUFFER_66,
    BUFFER_67,
    BUFFER_68,
    BUFFER_69,
    BUFFER_70,
    BUFFER_71,
    BUFFER_72,
    BUFFER_73,
    BUFFER_74,
    BUFFER_75,
    BUFFER_76,
    BUFFER_77,
    BUFFER_78,
    BUFFER_79,
    BUFFER_80,
    BUFFER_81,
    BUFFER_82,
    BUFFER_83,
    BUFFER_84,
    BUFFER_85,
    BUFFER_86,
    BUFFER_87,
    BUFFER_88,
    BUFFER_89,
    BUFFER_90,
    BUFFER_91,
    BUFFER_92,
    BUFFER_93,
    BUFFER_94,
    BUFFER_95,
    BUFFER_96,
    BUFFER_97,
    BUFFER_98,
    BUFFER_99,

    MDL_LAST_LABEL  // **** NOTE ****: Do keep this label always at the end,it is here for looping purposes
};//close enum Label

typedef std::vector<MDLabel> MDLabelVector;

#define FOR_ALL_LABELS() for (int _label = MDL_FIRST_LABEL; _label < MDL_LAST_LABEL; ++_label)

enum MDLabelType
{
    LABEL_NOTYPE = -1,
    LABEL_INT,
    LABEL_BOOL,
    LABEL_DOUBLE,
    LABEL_STRING,
    LABEL_VECTOR_DOUBLE,
    LABEL_SIZET,
    LABEL_VECTOR_SIZET,
    LABEL_VECTOR_FLOAT
};

enum MDLabelTag
{
    TAGLABEL_NOTAG = 0,
    TAGLABEL_TEXTFILE=0x1,
    TAGLABEL_METADATA=0x3,
    TAGLABEL_CTFPARAM=0x5,
    TAGLABEL_IMAGE=0x8,
    TAGLABEL_VOLUME=0x10,
    TAGLABEL_STACK=0x20,
    TAGLABEL_MICROGRAPH=0x48,
    TAGLABEL_PSD=0x88
};

bool vectorContainsLabel(const std::vector<MDLabel>& labelsVector, const MDLabel label);

//Just an struct to store type and string alias
class MDLabelData
{
public:
    MDLabelType type;
    String str;
    int tags;
    //Default constructor
    MDLabelData()
    {
        type = LABEL_NOTYPE;
        tags=TAGLABEL_NOTAG;
    }

    MDLabelData(MDLabelType t, const String &s, int tags)
    {
        type = t;
        str = s;
        this->tags=tags;
    }
}
;//close class MDLabelData

#ifndef __APPLE__
template class std::vector<MDObject *>
;
#endif

#endif