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Xmipp
v3.23.11-Nereus
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Xmipp
v3.23.11-Nereus
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#include <Python.h>#include "../../core/metadata_extension.h"#include "../../core/xmipp_image_generic.h"#include "../../core/xmipp_image_extension.h"#include "../../core/xmipp_color.h"#include "../../core/symmetries.h"#include "python_filename.h"#include "python_image.h"#include "python_program.h"#include "python_metadata.h"#include "python_symmetry.h"
Go to the source code of this file.
Macros | |
| #define | NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION |
| #define | SymList_Check(v) (((v)->ob_type == &SymListType)) |
| #define | SymList_Value(v) ((*((SymListObject*)(v))->symlist)) |
Functions | |
| PyObject * | xmipp_str2Label (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_label2Str (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_colorStr (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_labelType (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_labelHasTag (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_labelIsImage (PyObject *obj, PyObject *args) |
| PyObject * | xmipp_isValidLabel (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_createEmptyFile (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_getImageSize (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_ImgSize (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_CheckImageFileSize (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_CheckImageCorners (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_ImgCompare (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_compareTwoFiles (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_compareTwoImageTolerance (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_bsoftRemoveLoopBlock (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_bsoftRestoreLoopBlock (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_readMetaDataWithTwoPossibleImages (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_substituteOriginalImages (PyObject *obj, PyObject *args, PyObject *kwargs) |
| bool | validateInputImageString (PyObject *pyImage, PyObject *pyStrFn, FileName &fn) |
| PyObject * | xmipp_compareTwoMetadataFiles (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_dumpToFile (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_Euler_angles2matrix (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | xmipp_Euler_direction (PyObject *obj, PyObject *args, PyObject *kwargs) |
| PyObject * | MetaData_activateMathExtensions (PyObject *obj, PyObject *args, PyObject *kwargs) |
| void | addIntConstant (PyObject *dict, const char *name, const long &value) |
| void | addLabels (PyObject *dict) |
Variables | |
| PyObject * | PyXmippError |
| #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION |
Definition at line 30 of file xmippmoduleCore.h.
| #define SymList_Check | ( | v | ) | (((v)->ob_type == &SymListType)) |
Definition at line 48 of file xmippmoduleCore.h.
| #define SymList_Value | ( | v | ) | ((*((SymListObject*)(v))->symlist)) |
Definition at line 49 of file xmippmoduleCore.h.
| void addIntConstant | ( | PyObject * | dict, |
| const char * | name, | ||
| const long & | value | ||
| ) |
Definition at line 40 of file python_constants.cpp.
| void addLabels | ( | PyObject * | dict | ) |
RELION labels
< ID for the area (or field of view). If one does not use (tilt) series, area would be the same as micrograph...
< Name for the area (or field of view). If one does not use (tilt) series, area would be the same as micrograph...
< B-factor
< linear scale-factor
< Sampling rate
< Microscope voltage (kV)
< Defocus U (Angstroms)
< Defocus V (Angstroms)
< Defocus angle (degrees)
< Spherical aberration
< Chromatic aberration
< Pixel size for detector as used in CTF-determination
< Energy loss
< ctffind3 FOM (CC) for quality of CTF-fit
< name of an image describing the CTF model
< Lens stability
< Magnification used for CTF-determination
< Convergence cone
< Longitudinal displacement
< Transversal displacemente
< Amplitude contrast
< CTF gain
< CTF value
< Phase-shift from a phase-plate (in degrees)
< Detector MTF value
Definition at line 52 of file python_constants.cpp.
| PyObject* MetaData_activateMathExtensions | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
| bool validateInputImageString | ( | PyObject * | pyImage, |
| PyObject * | pyStrFn, | ||
| FileName & | fn | ||
| ) |
Definition at line 663 of file xmippmodule.cpp.
| PyObject* xmipp_bsoftRemoveLoopBlock | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 459 of file xmippmodule.cpp.
| PyObject* xmipp_bsoftRestoreLoopBlock | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 487 of file xmippmodule.cpp.
| PyObject* xmipp_CheckImageCorners | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 370 of file xmippmodule.cpp.
| PyObject* xmipp_CheckImageFileSize | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 344 of file xmippmodule.cpp.
| PyObject* xmipp_colorStr | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 74 of file xmippmodule.cpp.
| PyObject* xmipp_compareTwoFiles | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 427 of file xmippmodule.cpp.
| PyObject* xmipp_compareTwoImageTolerance | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 514 of file xmippmodule.cpp.
| PyObject* xmipp_compareTwoMetadataFiles | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 686 of file xmippmodule.cpp.
| PyObject* xmipp_createEmptyFile | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 195 of file xmippmodule.cpp.
| PyObject* xmipp_dumpToFile | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 753 of file xmippmodule.cpp.
| PyObject* xmipp_Euler_angles2matrix | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 773 of file xmippmodule.cpp.
| PyObject* xmipp_Euler_direction | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 834 of file xmippmodule.cpp.
| PyObject* xmipp_getImageSize | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 225 of file xmippmodule.cpp.
| PyObject* xmipp_ImgCompare | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 396 of file xmippmodule.cpp.
| PyObject* xmipp_ImgSize | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
| PyObject* xmipp_isValidLabel | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 176 of file xmippmodule.cpp.
| PyObject* xmipp_label2Str | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 62 of file xmippmodule.cpp.
| PyObject* xmipp_labelHasTag | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 109 of file xmippmodule.cpp.
| PyObject* xmipp_labelIsImage | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 145 of file xmippmodule.cpp.
| PyObject* xmipp_labelType | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 88 of file xmippmodule.cpp.
| PyObject* xmipp_readMetaDataWithTwoPossibleImages | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 569 of file xmippmodule.cpp.
| PyObject* xmipp_str2Label | ( | PyObject * | obj, |
| PyObject * | args | ||
| ) |
Definition at line 53 of file xmippmodule.cpp.
| PyObject* xmipp_substituteOriginalImages | ( | PyObject * | obj, |
| PyObject * | args, | ||
| PyObject * | kwargs | ||
| ) |
Definition at line 608 of file xmippmodule.cpp.
| PyObject* PyXmippError |
Definition at line 47 of file xmippmodule.cpp.
1.8.13