Releases scipion-em-xmippTomo
3.23.11 Nereus
- Protocols updated
applyAlignmentTS
extract_particlesstacks: Added angles from Tilt Series
extract_subtomos: Keeping directions in extract subtomos
project_subtomograms: Added angles from Tilt Series
deep_misalignment_detection: Update deep misalignment detection with new version of subtomo extraction and fiducial size options
subtraction_subtomo: Improved implementation with MPI and md convert
cltomo:
resolution_local_monotomo: Allowing odd-even associated to the full tomogram
- Protocls fixed
extract_particlestacks: Dose fixes
deep_misalignment_detection: Recover deleted methods
dose_filter: Dose validation fixed
score_coordinates: Test improvements and carbon score fixes
- More xmippTomo
Fixed calculateRotationAngleAndShiftsFromTM
Test refactoring
3.23.07 - Morpheus
- New protocols
project_subtomograms (for obtaining sobtomogram projections)
extract_particlestacks (extract from tilt series and SetOfTiltSeriesParticle)
denoising_confidence
extract_particlestacks
deep_misalignment_detection (misalignment detection in tomographic reconstructions from high-contrast regions)
peak_high_contrast (for detecting high contrast regions in tomographic reconstruction)
- Protocols updated
project_top: Subtomo projector compatible with hdf stacks. Test fixed. Projections keep orientation, Ignore alignments in projection
subtomo_map_back, score_coordinates: Mapback scales any reference to match the tomogram sampling
subtomo_map_back: Mapback waits now when scheduled and not the reference is needed, works with 3d classes, works with “other tomograms”
project_subtomograms: Parallelized protocol
- More xmipptomo
Update requirements.txt
Fix tests: protocol_extract_subtomos, monotomo, crop, resize, xmipptomo