#include "ml_refine3d.h"
#include "core/metadata_sql.h"
#include "core/xmipp_image.h"
#include "core/xmipp_image_generic.h"
#include "core/xmipp_log.h"
#include "data/morphology.h"
#include "data/fourier_projection.h"
#include "data/projection.h"
#include "reconstruct_art.h"
#include "reconstruct_fourier.h"
#include "data/fourier_filter.h"
#include "mlf_align2d.h"
#include "ml_align2d.h"
#include "symmetrize.h"
#include "volume_segment.h"

Include dependency graph for ml_refine3d.cpp:

Macros
#define	FN_ITER(iter, suffix) formatString("%sextra/iter%03d/%s",fn_root.c_str(), (iter), (suffix))

#define	FN_ITER_BASE(iter) FN_ITER(iter, "vol")

#define	FN_INITIAL_BASE FN_ITER_BASE(0)

#define	FN_PROJECTIONS_MD FN_EXTRA("projections.xmd")

#define	FN_PROJECTIONS FN_EXTRA("projections.stk")

#define	FN_NOISE_VOLBASE FN_EXTRA("noise_vol")

#define	FN_CREF_VOLBASE FN_EXTRA("cref_vol")

#define	COMPOSE_VOL_FN(fn, volno, base) fn.compose(base, volno, "vol")

Macro Definition Documentation

◆ COMPOSE_VOL_FN

#define COMPOSE_VOL_FN	(	fn,
		volno,
		base
	)	fn.compose(base, volno, "vol")

Definition at line 55 of file ml_refine3d.cpp.

◆ FN_CREF_VOLBASE

#define FN_CREF_VOLBASE FN_EXTRA("cref_vol")

Definition at line 53 of file ml_refine3d.cpp.

◆ FN_INITIAL_BASE

#define FN_INITIAL_BASE FN_ITER_BASE(0)

Definition at line 48 of file ml_refine3d.cpp.

◆ FN_ITER

#define FN_ITER	(	iter,
		suffix
	)	formatString("%sextra/iter%03d/%s",fn_root.c_str(), (iter), (suffix))

Definition at line 45 of file ml_refine3d.cpp.

◆ FN_ITER_BASE

#define FN_ITER_BASE ( iter ) FN_ITER(iter, "vol")

Definition at line 47 of file ml_refine3d.cpp.

◆ FN_NOISE_VOLBASE

#define FN_NOISE_VOLBASE FN_EXTRA("noise_vol")

Definition at line 52 of file ml_refine3d.cpp.

◆ FN_PROJECTIONS

#define FN_PROJECTIONS FN_EXTRA("projections.stk")

Definition at line 50 of file ml_refine3d.cpp.

◆ FN_PROJECTIONS_MD

#define FN_PROJECTIONS_MD FN_EXTRA("projections.xmd")

Definition at line 49 of file ml_refine3d.cpp.

Macros