Collaboration diagram for mlf_align2d (Maximum likelihood in 2D in Fourier space):

Classes
class	ProgMLF2D

Macros
#define	FOR_ALL_MODELS() for (int refno=0;refno<model.n_ref; refno++)

#define	FOR_ALL_ROTATIONS() for (size_t ipsi=0; ipsi<nr_psi; ipsi++ )

#define	FOR_ALL_FLIPS() for (size_t iflip=0; iflip<nr_flip; iflip++)

#define	FOR_ALL_LIMITED_TRANSLATIONS() for (size_t itrans=0; itrans<nr_trans; itrans++)

#define	FOR_ALL_DEFOCUS_GROUPS() for (size_t ifocus=0; ifocus<nr_focus; ifocus++)

#define	FOR_ALL_DIGITAL_FREQS() for (size_t irr = 0; irr < hdim; irr++)

#define	FOR_ALL_POINTS() for (size_t ipoint = 0; ipoint < nr_points_2d; ++ipoint)

#define	VSNR_ITEM dAi(Vsnr[ifocus], irr)

#define	VCTF_ITEM dAi(Vctf[ifocus], irr)

#define	VDEC_ITEM dAi(Vdec[ifocus], irr)

#define	VSIG_ITEM dAi(Vsig[ifocus], irr)

#define	SIGNIFICANT_WEIGHT_LOW 1e-8

#define	FN_EXTRA(file) formatString("%sextra/%s", fn_root.c_str(), file)

#define	FN_NOISE_IMG_MD FN_EXTRA("noise_images.xmd")

#define	FN_NOISE_IMG FN_EXTRA("noise_images.stk")

#define	FN_CREF_IMG FN_EXTRA("cref_classes.stk")

#define	FN_CREF_IMG_MD FN_EXTRA("cref_classes.xmd")

#define	FN_ITER_BASE(iter) getIterExtraPath(fn_root, iter)

#define	FN_REF(base, refno) formatString("%06d@%sclasses.stk", (refno), (base).c_str())

#define	FN_VSIG(base, ifocus, ext) ((nr_focus > 1) ? formatString("ctf%06d@%s%s", ((ifocus) + 1), (base).c_str(), (ext)) : ((base) + "_ctf" + (ext)))

Variables
constexpr double	SMALLVALUE = 1e-4

constexpr float	HISTMIN = -6.

constexpr float	HISTMAX = 6.

constexpr int	HISTSTEPS = 120

Detailed Description

Macro Definition Documentation

◆ FN_CREF_IMG

#define FN_CREF_IMG FN_EXTRA("cref_classes.stk")

Definition at line 61 of file mlf_align2d.h.

◆ FN_CREF_IMG_MD

#define FN_CREF_IMG_MD FN_EXTRA("cref_classes.xmd")

Definition at line 62 of file mlf_align2d.h.

◆ FN_EXTRA

#define FN_EXTRA ( file ) formatString("%sextra/%s", fn_root.c_str(), file)

Some filename convetions for output files

Definition at line 58 of file mlf_align2d.h.

◆ FN_ITER_BASE

#define FN_ITER_BASE ( iter ) getIterExtraPath(fn_root, iter)

Definition at line 64 of file mlf_align2d.h.

◆ FN_NOISE_IMG

#define FN_NOISE_IMG FN_EXTRA("noise_images.stk")

Definition at line 60 of file mlf_align2d.h.

◆ FN_NOISE_IMG_MD

#define FN_NOISE_IMG_MD FN_EXTRA("noise_images.xmd")

Definition at line 59 of file mlf_align2d.h.

◆ FN_REF

#define FN_REF	(	base,
		refno
	)	formatString("%06d@%sclasses.stk", (refno), (base).c_str())

Definition at line 65 of file mlf_align2d.h.

◆ FN_VSIG

#define FN_VSIG	(	base,
		ifocus,
		ext
	)	((nr_focus > 1) ? formatString("ctf%06d@%s%s", ((ifocus) + 1), (base).c_str(), (ext)) : ((base) + "_ctf" + (ext)))

Definition at line 66 of file mlf_align2d.h.

◆ FOR_ALL_DEFOCUS_GROUPS

#define FOR_ALL_DEFOCUS_GROUPS ( ) for (size_t ifocus=0; ifocus<nr_focus; ifocus++)

Definition at line 40 of file mlf_align2d.h.

◆ FOR_ALL_DIGITAL_FREQS

#define FOR_ALL_DIGITAL_FREQS ( ) for (size_t irr = 0; irr < hdim; irr++)

Definition at line 41 of file mlf_align2d.h.

◆ FOR_ALL_FLIPS

#define FOR_ALL_FLIPS ( ) for (size_t iflip=0; iflip<nr_flip; iflip++)

Definition at line 38 of file mlf_align2d.h.

◆ FOR_ALL_LIMITED_TRANSLATIONS

#define FOR_ALL_LIMITED_TRANSLATIONS ( ) for (size_t itrans=0; itrans<nr_trans; itrans++)

Definition at line 39 of file mlf_align2d.h.

◆ FOR_ALL_MODELS

#define FOR_ALL_MODELS ( ) for (int refno=0;refno<model.n_ref; refno++)

Definition at line 36 of file mlf_align2d.h.

◆ FOR_ALL_POINTS

#define FOR_ALL_POINTS ( ) for (size_t ipoint = 0; ipoint < nr_points_2d; ++ipoint)

Definition at line 42 of file mlf_align2d.h.

◆ FOR_ALL_ROTATIONS

#define FOR_ALL_ROTATIONS ( ) for (size_t ipsi=0; ipsi<nr_psi; ipsi++ )

Definition at line 37 of file mlf_align2d.h.

◆ SIGNIFICANT_WEIGHT_LOW

#define SIGNIFICANT_WEIGHT_LOW 1e-8

Definition at line 51 of file mlf_align2d.h.

◆ VCTF_ITEM

#define VCTF_ITEM dAi(Vctf[ifocus], irr)

Definition at line 47 of file mlf_align2d.h.

◆ VDEC_ITEM

#define VDEC_ITEM dAi(Vdec[ifocus], irr)

Definition at line 48 of file mlf_align2d.h.

◆ VSIG_ITEM

#define VSIG_ITEM dAi(Vsig[ifocus], irr)

Definition at line 49 of file mlf_align2d.h.

◆ VSNR_ITEM

#define VSNR_ITEM dAi(Vsnr[ifocus], irr)

Definition at line 46 of file mlf_align2d.h.

Variable Documentation

◆ HISTMAX

constexpr float HISTMAX = 6.

Definition at line 54 of file mlf_align2d.h.

◆ HISTMIN

constexpr float HISTMIN = -6.

Definition at line 53 of file mlf_align2d.h.

◆ HISTSTEPS

constexpr int HISTSTEPS = 120

Definition at line 55 of file mlf_align2d.h.

◆ SMALLVALUE

constexpr double SMALLVALUE = 1e-4

Definition at line 52 of file mlf_align2d.h.

Classes

Macros

Variables