ml2d.h File Reference

#include <sys/time.h>
#include <pthread.h>
#include <random>
#include <vector>
#include <core/xmipp_fftw.h>
#include <core/xmipp_fft.h>
#include <core/args.h>
#include <core/xmipp_funcs.h>
#include <core/metadata_extension.h>
#include <core/xmipp_image.h>
#include <core/geometry.h>
#include <data/filters.h>
#include <data/mask.h>
#include <data/ctf.h>
#include <core/xmipp_threads.h>
#include <core/xmipp_program.h>
#include <core/xmipp_log.h>

Include dependency graph for ml2d.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	ModelML2D
class	ML2DBaseProgram

Macros
#define	SIGNIFICANT_WEIGHT_LOW   1e-8
#define	SMALLANGLE   1.75
#define	DATALINELENGTH   12
#define	FN_EXTRA(file)   formatString("%sextra/%s", fn_root.c_str(), file)
	******** ML2D filenames convention ************* More...
#define	FN_IMAGES_MD(base)   (base) + "images.xmd"
#define	FN_CLASSES_MD(base)   formatString("classes@%sclasses.xmd", (base).c_str())
#define	FN_LOGS_MD(base)   formatString("info@%sclasses.xmd", (base).c_str())
#define	FN_CLASS_IMAGES_MD(base, ref)   formatString("class%06d_images@%sclasses.xmd", (ref), (base).c_str())
#define	FN_CLASSES_STK(base)   (base) + "classes.stk"
#define	FOR_ALL_GLOBAL_IMAGES()   for (size_t imgno = 0; imgno < nr_images_global; ++imgno)
	******** Some macro definitions **************** More...
#define	FOR_ALL_LOCAL_IMAGES()   for (size_t imgno = myFirstImg; imgno <= myLastImg; ++imgno)
#define	IMG_LOCAL_INDEX   (imgno - myFirstImg)
#define	IMG_REAL_INDEX(imgno)   (img_id[(imgno)])
#define	IMG_BLOCK(imgno)   (imgno) % blocks
#define	IS_MASTER   (rank == 0)

Enumerations
enum	ThreadTask {   TH_EXIT, TH_ESI_REFNO, TH_ESI_UPDATE_REFNO, TH_RR_REFNO,   TH_RRR_REFNO, TH_PFS_REFNO }
enum	OutputType {   OUT_BLOCK, OUT_ITER, OUT_FINAL, OUT_REFS,   OUT_IMGS }

Functions
FileName	getIterExtraPath (const FileName &fn_root, int iter, bool makePath=true)

Macro Definition Documentation

DATALINELENGTH

#define DATALINELENGTH   12

Definition at line 50 of file ml2d.h.

FN_CLASS_IMAGES_MD

#define FN_CLASS_IMAGES_MD	(		base,
			ref
	)		formatString("class%06d_images@%sclasses.xmd", (ref), (base).c_str())

Definition at line 57 of file ml2d.h.

FN_CLASSES_MD

#define FN_CLASSES_MD

(

base

)

formatString("classes@%sclasses.xmd", (base).c_str())

Definition at line 55 of file ml2d.h.

FN_CLASSES_STK

#define FN_CLASSES_STK

(

base

)

(base) + "classes.stk"

Definition at line 58 of file ml2d.h.

FN_EXTRA

#define FN_EXTRA

(

file

)

formatString("%sextra/%s", fn_root.c_str(), file)

******** ML2D filenames convention *************

Definition at line 53 of file ml2d.h.

FN_IMAGES_MD

#define FN_IMAGES_MD

(

base

)

(base) + "images.xmd"

Definition at line 54 of file ml2d.h.

FN_LOGS_MD

#define FN_LOGS_MD

(

base

)

formatString("info@%sclasses.xmd", (base).c_str())

Definition at line 56 of file ml2d.h.

FOR_ALL_GLOBAL_IMAGES

#define FOR_ALL_GLOBAL_IMAGES

(

)

for (size_t imgno = 0; imgno < nr_images_global; ++imgno)

******** Some macro definitions ****************

Definition at line 61 of file ml2d.h.

FOR_ALL_LOCAL_IMAGES

#define FOR_ALL_LOCAL_IMAGES

(

)

for (size_t imgno = myFirstImg; imgno <= myLastImg; ++imgno)

Definition at line 64 of file ml2d.h.

IMG_BLOCK

#define IMG_BLOCK

(

imgno

)

(imgno) % blocks

Definition at line 69 of file ml2d.h.

IMG_LOCAL_INDEX

#define IMG_LOCAL_INDEX   (imgno - myFirstImg)

Definition at line 67 of file ml2d.h.

IMG_REAL_INDEX

#define IMG_REAL_INDEX

(

imgno

)

(img_id[(imgno)])

Definition at line 68 of file ml2d.h.

IS_MASTER

#define IS_MASTER   (rank == 0)

Definition at line 72 of file ml2d.h.

SIGNIFICANT_WEIGHT_LOW

#define SIGNIFICANT_WEIGHT_LOW   1e-8

Definition at line 48 of file ml2d.h.

SMALLANGLE

#define SMALLANGLE   1.75

Definition at line 49 of file ml2d.h.

Enumeration Type Documentation

OutputType

enum OutputType

Enumerator
OUT_BLOCK
OUT_ITER
OUT_FINAL
OUT_REFS
OUT_IMGS

Definition at line 76 of file ml2d.h.

{ OUT_BLOCK, OUT_ITER, OUT_FINAL, OUT_REFS, OUT_IMGS } OutputType;

ThreadTask

enum ThreadTask

Enumerator
TH_EXIT
TH_ESI_REFNO
TH_ESI_UPDATE_REFNO
TH_RR_REFNO
TH_RRR_REFNO
TH_PFS_REFNO

Definition at line 74 of file ml2d.h.

{ TH_EXIT, TH_ESI_REFNO, TH_ESI_UPDATE_REFNO, TH_RR_REFNO, TH_RRR_REFNO, TH_PFS_REFNO } ThreadTask;