ctf_estimate_from_psd.cpp File Reference

#include <fstream>
#include "ctf_estimate_from_psd.h"
#include "ctf_estimate_from_psd_fast.h"
#include "core/matrix2d.h"
#include "core/transformations.h"
#include "core/metadata_vec.h"
#include "data/numerical_tools.h"
#include "fringe_processing.h"

Include dependency graph for ctf_estimate_from_psd.cpp:

Go to the source code of this file.

Namespaces
	AdjustCTF

Macros
#define	DEBUG_OPEN_TEXTFILE(fnRoot)   ;
#define	DEBUG_CLOSE_TEXTFILE   ;
#define	DEBUG_TEXTFILE(str)   ;
#define	DEBUG_MODEL_TEXTFILE
#define	ASSIGN_CTF_PARAM(index, paramName)   if (ia <= index && l > 0) { ctfmodel.paramName = p[index]; --l; }
#define	ASSIGN_PARAM_CTF(index, paramName)   if (ia <= index && l > 0) { p[index] = ctfmodel.paramName; --l; }
#define	COPY_ctfmodel_TO_CURRENT_GUESS

Functions
double	CTF_fitness (double *, void *)
double	ROUT_Adjust_CTF (ProgCTFEstimateFromPSD &prm, CTFDescription &output_ctfmodel, bool standalone)

Variables
constexpr int	ALL_CTF_PARAMETERS = 38
constexpr int	CTF_PARAMETERS = 30
constexpr int	PARAMETRIC_CTF_PARAMETERS = 16
constexpr int	BACKGROUND_CTF_PARAMETERS = 14
constexpr int	SQRT_CTF_PARAMETERS = 8
constexpr int	ENVELOPE_PARAMETERS = 11
constexpr int	DEFOCUS_PARAMETERS = 5
constexpr int	FIRST_SQRT_PARAMETER = 16
constexpr int	FIRST_ENVELOPE_PARAMETER = 4
constexpr int	FIRST_DEFOCUS_PARAMETER = 0
ProgCTFEstimateFromPSD *	AdjustCTF::global_prm

Macro Definition Documentation

ASSIGN_CTF_PARAM

#define ASSIGN_CTF_PARAM	(		index,
			paramName
	)		if (ia <= index && l > 0) { ctfmodel.paramName = p[index]; --l; }

Definition at line 78 of file ctf_estimate_from_psd.cpp.

ASSIGN_PARAM_CTF

#define ASSIGN_PARAM_CTF	(		index,
			paramName
	)		if (ia <= index && l > 0) { p[index] = ctfmodel.paramName; --l; }

Definition at line 174 of file ctf_estimate_from_psd.cpp.

COPY_ctfmodel_TO_CURRENT_GUESS

#define COPY_ctfmodel_TO_CURRENT_GUESS

Value:

global_prm->assignParametersFromCTF(global_prm->current_ctfmodel, \
                               MATRIX1D_ARRAY(*global_prm->adjust_params),0,ALL_CTF_PARAMETERS, \
                               global_prm->modelSimplification);

Definition at line 264 of file ctf_estimate_from_psd.cpp.

DEBUG_CLOSE_TEXTFILE

#define DEBUG_CLOSE_TEXTFILE   ;

Definition at line 61 of file ctf_estimate_from_psd.cpp.

DEBUG_MODEL_TEXTFILE

#define DEBUG_MODEL_TEXTFILE

Definition at line 63 of file ctf_estimate_from_psd.cpp.

DEBUG_OPEN_TEXTFILE

#define DEBUG_OPEN_TEXTFILE

(

fnRoot

)

;

Definition at line 60 of file ctf_estimate_from_psd.cpp.

DEBUG_TEXTFILE

#define DEBUG_TEXTFILE

(

str

)

;

Definition at line 62 of file ctf_estimate_from_psd.cpp.

Function Documentation

CTF_fitness()

double CTF_fitness	(	double *	p,
		void *	vprm
	)

Definition at line 979 of file ctf_estimate_from_psd.cpp.

{
    auto *prm=(ProgCTFEstimateFromPSD *) vprm;
    return prm->CTF_fitness_object(p);
}

Variable Documentation

ALL_CTF_PARAMETERS

constexpr int ALL_CTF_PARAMETERS = 38

Definition at line 41 of file ctf_estimate_from_psd.cpp.

BACKGROUND_CTF_PARAMETERS

constexpr int BACKGROUND_CTF_PARAMETERS = 14

Definition at line 44 of file ctf_estimate_from_psd.cpp.

CTF_PARAMETERS

constexpr int CTF_PARAMETERS = 30

Definition at line 42 of file ctf_estimate_from_psd.cpp.

DEFOCUS_PARAMETERS

constexpr int DEFOCUS_PARAMETERS = 5

Definition at line 47 of file ctf_estimate_from_psd.cpp.

ENVELOPE_PARAMETERS

constexpr int ENVELOPE_PARAMETERS = 11

Definition at line 46 of file ctf_estimate_from_psd.cpp.

FIRST_DEFOCUS_PARAMETER

constexpr int FIRST_DEFOCUS_PARAMETER = 0

Definition at line 50 of file ctf_estimate_from_psd.cpp.

FIRST_ENVELOPE_PARAMETER

constexpr int FIRST_ENVELOPE_PARAMETER = 4

Definition at line 49 of file ctf_estimate_from_psd.cpp.

FIRST_SQRT_PARAMETER

constexpr int FIRST_SQRT_PARAMETER = 16

Definition at line 48 of file ctf_estimate_from_psd.cpp.

PARAMETRIC_CTF_PARAMETERS

constexpr int PARAMETRIC_CTF_PARAMETERS = 16

Definition at line 43 of file ctf_estimate_from_psd.cpp.

SQRT_CTF_PARAMETERS

constexpr int SQRT_CTF_PARAMETERS = 8

Definition at line 45 of file ctf_estimate_from_psd.cpp.