27 #ifndef _CORE_ADJUST_CTF_HH 28 #define _CORE_ADJUST_CTF_HH 82 int l,
int modelSimplification);
121 double &defocusU,
double &defocusV,
double &ellipseAngle,
int verbose);
131 bool standalone =
true);
void generate_model_quadrant(int Ydim, int Xdim, MultidimArray< double > &model)
void assignParametersFromCTF(const CTFDescription &ctfmodel, double *p, int ia, int l, int modelSimplification)
CTFDescription ctfmodel_defoci
void estimate_background_sqrt_parameters()
void saveIntermediateResults(const FileName &fn_root, bool generate_profiles)
CTFDescription current_ctfmodel
int sizeWindowPhase
Size of the average window used during phase direction and unwrapping estimates (used in Zernike esti...
void assignCTFfromParameters(double *p, CTFDescription &ctfmodel, int ia, int l, int modelSimplification)
void estimate_envelope_parameters()
void readBasicParams(XmippProgram *program)
Read parameters.
double evaluateIceness(const MultidimArray< double > &enhanced_ctftomodel, double Tm)
void produceSideInfo()
Produce side information.
double CTF_fitness_object(double *p)
double max_freq
Maximum frequency to adjust.
void center_optimization_focus(bool adjust_freq, bool adjust_th, double margin)
void generateModelSoFar(Image< double > &I, bool apply_log)
void estimate_defoci_Zernike()
void compute_central_region(double &w1, double &w2, double ang)
int verbose
Verbosity level.
void generate_model_halfplane(int Ydim, int Xdim, MultidimArray< double > &model)
int modelSimplification
Model simplification.
double min_freq
Minimum frequency to adjust.
void estimate_background_gauss_parameters()
Image< double > enhanced_ctftomodel
CTF amplitude to model.
double lambdaPhase
Regularization factor for the phase direction and unwrapping estimates (used in Zernike estimate) ...
void defineParams()
Define Parameters.
CTFDescription initial_ctfmodel
CTF model.
static void defineBasicParams(XmippProgram *program)
Define basic parameters.
double ROUT_Adjust_CTF(ProgCTFEstimateFromPSD &prm, CTFDescription &output_ctfmodel, bool standalone=true)
void estimate_background_gauss_parameters2()