MpiProgAngularAccuracyPCA Class Reference

#include <mpi_angular_accuracy_pca.h>

Inheritance diagram for MpiProgAngularAccuracyPCA:

Collaboration diagram for MpiProgAngularAccuracyPCA:

Public Member Functions
	MpiProgAngularAccuracyPCA ()
	~MpiProgAngularAccuracyPCA ()
	MpiProgAngularAccuracyPCA (const MpiProgAngularAccuracyPCA &)=delete
	MpiProgAngularAccuracyPCA (const MpiProgAngularAccuracyPCA &&)=delete
MpiProgAngularAccuracyPCA &	operator= (const MpiProgAngularAccuracyPCA &)=delete
MpiProgAngularAccuracyPCA &	operator= (const MpiProgAngularAccuracyPCA &&)=delete
void	read (int argc, char **argv)
void	synchronize ()
	Synchronize with other processors. More...
void	gatherResults ()
	Gather alignment. More...
Public Member Functions inherited from ProgAngularAccuracyPCA
void	readParams ()
void	defineParams ()
void	run ()
void	obtainPCAs (MetaData &SF, size_t numPCAs)
	ProgAngularAccuracyPCA ()
Public Member Functions inherited from XmippProgram
const char *	getParam (const char *param, int arg=0)
const char *	getParam (const char *param, const char *subparam, int arg=0)
int	getIntParam (const char *param, int arg=0)
int	getIntParam (const char *param, const char *subparam, int arg=0)
double	getDoubleParam (const char *param, int arg=0)
double	getDoubleParam (const char *param, const char *subparam, int arg=0)
float	getFloatParam (const char *param, int arg=0)
float	getFloatParam (const char *param, const char *subparam, int arg=0)
void	getListParam (const char *param, StringVector &list)
int	getCountParam (const char *param)
bool	checkParam (const char *param)
bool	existsParam (const char *param)
void	addParamsLine (const String &line)
void	addParamsLine (const char *line)
ParamDef *	getParamDef (const char *param) const
virtual void	quit (int exit_code=0) const
virtual int	tryRun ()
void	initProgress (size_t total, size_t stepBin=60)
void	setProgress (size_t value=0)
void	endProgress ()
void	processDefaultComment (const char *param, const char *left)
void	setDefaultComment (const char *param, const char *comment)
virtual void	initComments ()
void	setProgramName (const char *name)
void	addUsageLine (const char *line, bool verbatim=false)
void	clearUsage ()
void	addExampleLine (const char *example, bool verbatim=true)
void	addSeeAlsoLine (const char *seeAlso)
void	addKeywords (const char *keywords)
const char *	name () const
virtual void	usage (int verb=0) const
virtual void	usage (const String &param, int verb=2)
int	version () const
virtual void	show () const
virtual void	read (int argc, const char **argv, bool reportErrors=true)
virtual void	read (int argc, char **argv, bool reportErrors=true)
void	read (const String &argumentsLine)
	XmippProgram ()
	XmippProgram (int argc, const char **argv)
virtual	~XmippProgram ()

Public Attributes
MpiNode *	node =nullptr
Public Attributes inherited from ProgAngularAccuracyPCA
FileName	fnPhantom
FileName	fnNeighbours
FileName	fnOut
FileName	fnOutQ
Image< double >	phantomVol
MetaDataDb	mdPartial
size_t	rank
size_t	Nprocessors
PCAMahalanobisAnalyzer	pca
int	newXdim
int	newYdim
Public Attributes inherited from XmippProgram
bool	doRun
bool	runWithoutArgs
int	verbose
	Verbosity level. More...
int	debug

Additional Inherited Members
Protected Member Functions inherited from XmippProgram
void	defineCommons ()
Protected Attributes inherited from XmippProgram
int	errorCode
ProgramDef *	progDef
	Program definition and arguments parser. More...
std::map< String, CommentList >	defaultComments
int	argc
	Original command line arguments. More...
const char **	argv

Detailed Description

Definition at line 36 of file mpi_angular_accuracy_pca.h.

Constructor & Destructor Documentation

MpiProgAngularAccuracyPCA() [1/3]

MpiProgAngularAccuracyPCA::MpiProgAngularAccuracyPCA ( )

inline

Definition at line 42 of file mpi_angular_accuracy_pca.h.

{}

~MpiProgAngularAccuracyPCA()

MpiProgAngularAccuracyPCA::~MpiProgAngularAccuracyPCA

(

)

Definition at line 28 of file mpi_angular_accuracy_pca.cpp.

{
    delete node;
}

MpiProgAngularAccuracyPCA() [2/3]

MpiProgAngularAccuracyPCA::MpiProgAngularAccuracyPCA ( const MpiProgAngularAccuracyPCA &  )

delete

MpiProgAngularAccuracyPCA() [3/3]

MpiProgAngularAccuracyPCA::MpiProgAngularAccuracyPCA ( const MpiProgAngularAccuracyPCA &&  )

delete

Member Function Documentation

gatherResults()

void MpiProgAngularAccuracyPCA::gatherResults ( )

virtual

Gather alignment.

Reimplemented from ProgAngularAccuracyPCA.

Definition at line 46 of file mpi_angular_accuracy_pca.cpp.

{
    if (rank!=0)
    {
        FileName fnPartial=formatString("%s/partial_node%03d.xmd",fnOut.getDir().c_str(),(int)rank);
        if (mdPartial.size()>0)
            mdPartial.write(fnPartial);
    }

    synchronize();

    // Now the master takes all of them
    if (rank==0)
    {
        MetaDataDb MDAux;
        for (size_t otherRank=1; otherRank<Nprocessors; ++otherRank)
        {
                FileName fnP = formatString("%s/partial_node%03d.xmd",fnOut.getDir().c_str(),(int)otherRank);

                if (fnP.exists())
                {
                    MDAux.read(fnP);
                    mdPartial.unionAll(MDAux);
                    deleteFile(fnP);
                }
        }
    }

    synchronize();

}

operator=() [1/2]

MpiProgAngularAccuracyPCA& MpiProgAngularAccuracyPCA::operator= ( const MpiProgAngularAccuracyPCA &  )

delete

operator=() [2/2]

MpiProgAngularAccuracyPCA& MpiProgAngularAccuracyPCA::operator= ( const MpiProgAngularAccuracyPCA &&  )

delete

read()

void MpiProgAngularAccuracyPCA::read	(	int	argc,
		char **	argv
	)

Definition at line 33 of file mpi_angular_accuracy_pca.cpp.

{
    node = new MpiNode(argc, argv);
    rank = node->rank;
    Nprocessors = node->size;
    ProgAngularAccuracyPCA::read(argc, (const char **)argv);
}

synchronize()

void MpiProgAngularAccuracyPCA::synchronize ( )

virtual

Synchronize with other processors.

Reimplemented from ProgAngularAccuracyPCA.

Definition at line 41 of file mpi_angular_accuracy_pca.cpp.

{
    node->barrierWait();
}

Member Data Documentation

node

MpiNode* MpiProgAngularAccuracyPCA::node =nullptr

Definition at line 39 of file mpi_angular_accuracy_pca.h.

---

The documentation for this class was generated from the following files:

• xmipp/libraries/parallel/mpi_angular_accuracy_pca.h
• xmipp/libraries/parallel/mpi_angular_accuracy_pca.cpp