angular_accuracy_pca.h

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/***************************************************************************
 * Authors:     AUTHOR_NAME (jvargas@cnb.csic.es)
 *
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef ANGULAR_ACCURACY_PCA_H_
#define ANGULAR_ACCURACY_PCA_H_

#include "core/metadata_vec.h"
#include "core/metadata_db.h"
#include "core/xmipp_image.h"
#include "core/xmipp_program.h"
#include "data/basic_pca.h"


class ProgAngularAccuracyPCA: public XmippProgram
{
public:
    FileName fnPhantom, fnNeighbours, fnOut, fnOutQ;

    Image<double> phantomVol;

    MetaDataDb mdPartial;

    size_t rank, Nprocessors;

    PCAMahalanobisAnalyzer pca;

    int newXdim;

    int newYdim;

public:

    void readParams();

    void defineParams();

    void run();

    void obtainPCAs(MetaData &SF, size_t numPCAs);

public:

    ProgAngularAccuracyPCA();

    virtual void gatherResults() {}

    virtual void synchronize() {}

};
#endif /* ANGULAR_ACCURACY_PCA_H_ */