xmipp_hdf5.h

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/***************************************************************************
 * Authors:     Joaquin Oton (joton@cnb.csic.es)
 *
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef CORE_XMIPP_HDF5_H_
#define CORE_XMIPP_HDF5_H_

#include <iostream>
#include<map>
#include "hdf5.h"
#include "H5Cpp.h"
#include "matrix1d.h"



enum H5FileProvider
{
    NONE,
    MISTRAL,
    EMAN
} ;


typedef std::pair<H5FileProvider, String> H5infoProvider;
std::map<String, H5infoProvider > createProviderMap();

const std::map<String, H5infoProvider > H5ProviderMap = createProviderMap();

H5infoProvider getProvider(hid_t fhdf5);




class XmippH5File: public H5::H5File
{

public:

    void showTree(std::ostream &out = std::cout);

    void openFile(const H5std_string& name, unsigned int flags,
                  const H5::FileAccPropList& access_plist = H5::FileAccPropList::DEFAULT);

    int getDataset(const char* dsname, Matrix1D<double> &data, bool reportError = true) const;

    bool checkDataset(const char* dsname) const;
};

herr_t showObjectInfo(hid_t group, const char *name, void *op_data);


#endif /* XMIPP_HDF5_H_ */