Xmipp
v3.23.11-Nereus
xmipp
legacy
libraries
reconstruction_adapt_cuda
xmipp_gpu_correlation.h
Go to the documentation of this file.
1
/***************************************************************************
2
*
3
* Authors: Amaya Jimenez ajimenez@cnb.csic.es (2017)
4
*
5
* Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
6
*
7
* This program is free software; you can redistribute it and/or modify
8
* it under the terms of the GNU General Public License as published by
9
* the Free Software Foundation; either version 2 of the License, or
10
* (at your option) any later version.
11
*
12
* This program is distributed in the hope that it will be useful,
13
* but WITHOUT ANY WARRANTY; without even the implied warranty of
14
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15
* GNU General Public License for more details.
16
*
17
* You should have received a copy of the GNU General Public License
18
* along with this program; if not, write to the Free Software
19
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
20
* 02111-1307 USA
21
*
22
* All comments concerning this program package may be sent to the
23
* e-mail address 'xmipp@cnb.csic.es'
24
***************************************************************************/
25
#ifndef _PROG_GPU_CORRELATION
26
#define _PROG_GPU_CORRELATION
27
28
#include "
core/xmipp_program.h
"
29
#include "
reconstruction_cuda/gpu.h
"
30
#include "
core/xmipp_filename.h
"
31
#include "
core/metadata_vec.h
"
32
36
class
ProgGpuCorrelation
:
public
XmippProgram
37
{
38
private
:
39
//Input file
40
FileName
fn_ref, fn_exp, fn_out, fnDir, fn_classes_out;
41
42
bool
generate_out;
43
44
int
n_keep;
45
bool
significance, keepN, simplifiedMd;
46
double
alpha;
47
int
maxShift;
48
int
sizePad;
49
GPU
gpu;
50
51
public
:
52
//Input metadata file
53
MetaDataVec
SF
,
SFexp
;
54
56
void
readParams
();
57
59
void
show
();
60
62
void
defineParams
();
63
64
//void preProcess();
65
67
void
run
();
68
69
};
71
#endif
ProgGpuCorrelation::defineParams
void defineParams()
Define parameters.
Definition:
xmipp_gpu_correlation.cpp:536
xmipp_filename.h
metadata_vec.h
ProgGpuCorrelation::show
void show()
Show.
Definition:
xmipp_gpu_correlation.cpp:526
ProgGpuCorrelation
Definition:
xmipp_gpu_correlation.h:36
ProgGpuCorrelation::SF
MetaDataVec SF
Definition:
xmipp_gpu_correlation.h:53
ProgGpuCorrelation::SFexp
MetaDataVec SFexp
Definition:
xmipp_gpu_correlation.h:53
ProgGpuCorrelation::readParams
void readParams()
Read argument from command line.
Definition:
xmipp_gpu_correlation.cpp:494
FileName
Definition:
xmipp_filename.h:65
MetaDataVec
Definition:
metadata_vec.h:46
ProgGpuCorrelation::run
void run()
Definition:
xmipp_gpu_correlation.cpp:1337
gpu.h
xmipp_program.h
GPU
Definition:
gpu.h:36
XmippProgram
Definition:
xmipp_program.h:52
Generated by
1.8.13