volume_validate_pca.h

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/***************************************************************************
 * Authors:     AUTHOR_NAME (jvargas@cnb.csic.es)
 *
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef VOLUME_VALIDATE_PCA_H_
#define VOLUME_VALIDATE_PCA_H_


#endif /* VOLUME_VALIDATE_PCA_H_ */

#include <core/xmipp_program.h>
#include <core/metadata_vec.h>
#include "reconstruct_fourier.h"
#include "angular_project_library.h"
#include "dimred/pca.h"


class ProgVolumeValidationPCA: public XmippProgram
{
public:
    FileName fnClasses, fnSym, fnAngles;

    int NVols;

    int NClasses;

    bool doProjMatch;

private:
    size_t xdim, ydim, zdim, ndim;
    FileName fnVol, fnGallery;

public: // Internal members
    MetaDataVec mdClasses, mdReconstruction;

  public:
    void readParams();

    void defineParams();

    void show();

    void run();

    void produceSideinfo();

    void reconstruct();

    void modifyAngles();

    void evaluate();

};