tomo_remove_fluctuations.h

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/***************************************************************************
*
* Authors:    Carlos Oscar            coss@cnb.csic.es (2009)
*
* Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
* 02111-1307  USA
*
*  All comments concerning this program package may be sent to the
*  e-mail address 'xmipp@cnb.csic.es'
***************************************************************************/

#ifndef SERIES_REMOVE_FLUCTUATIONS_H
#define SERIES_REMOVE_FLUCTUATIONS_H

#include "core/metadata_vec.h"
#include "core/xmipp_image.h"
#include "core/xmipp_program.h"


class ProgTomoRemoveFluctuations: public XmippProgram
{
public:
    FileName fnIn;
    
    FileName fnOut;
    
    double maxFreq;
public:
    // Selfile with the input mages
    MetaDataVec SF;
    
    // Volume for holding the whole tilt series
    Image<double> V;

public:
    void readParams();

    void defineParams();

    void produceSideInfo();

    void show() const;

    void run();
};
#endif