test_transform_window.cpp File Reference

#include <stdlib.h>
#include <core/xmipp_image.h>
#include <core/xmipp_image_extension.h>
#include <iostream>
#include <gtest/gtest.h>
#include <data/phantom.h>
#include <core/xmipp_program.h>
#include <cstdio>
#include <unistd.h>

Include dependency graph for test_transform_window.cpp:

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Classes
class	TransformWindowTest

Macros
#define	DEBUG

Functions
	TEST_F (TransformWindowTest, unitcell)

Variables
const char	ico_i2 []

Macro Definition Documentation

DEBUG

#define DEBUG

Function Documentation

TEST_F()

TEST_F	(	TransformWindowTest	,
		unitcell
	)

Definition at line 117 of file test_transform_window.cpp.

{
    //create phantom volume
    char filename[] = "/tmp/mytemp.XXXXXX"; // template for our file.
    int fd = mkstemp(filename);    // Creates and opens a new temp file r/w.
                                     // Xs are replaced with a unique number.
#define DEBUG
#ifdef DEBUG
    std::cerr << "filename: " << filename << std::endl;
#endif
    if (fd == -1) {
        std::cerr << " cannot open temporary file" << std::endl;
        ASSERT_TRUE(false);
        return;
    }
    if (write(fd, ico_i2,sizeof(ico_i2)) == -1) FAIL() << "Could not write to file " << filename;

    Phantom           phantom;
    Image<double>     vol;
    const char  inFn[] = "/tmp/inTransformWindowTest.mrc";
    const char  outFn[] ="/tmp/outTransformWindowTest.mrc";
    phantom.read(filename);
    phantom.draw_in(vol());
    vol().addNoise(0,0.1,"gaussian");
    vol.write(inFn);
    //transform window is not in a library as it should be
    //so I need to make a system call
    char commandBuff[180];

    snprintf(commandBuff, sizeof(commandBuff),
            "xmipp_transform_window -i %s -o %s --unitcell i2 80 140 .25 0",
            inFn, outFn);
    ASSERT_EQ(0, system(commandBuff));
#ifdef DEBUG
    std::cerr << "commandBuff: " << commandBuff << std::endl;
#endif
#ifndef DEBUG
    unlink(inFn);
    unlink(outFn);
    unlink(filename);
#endif
    ASSERT_TRUE(true);
#undef DEBUG
}

Variable Documentation

ico_i2

const char ico_i2[]

Definition at line 13 of file test_transform_window.cpp.