precompute_sampling.h

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/***************************************************************************
 *
 * Authors:    Roberto Marabini 
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/
#ifndef _PRECOMPUTE_SAMPLING_H
#define _PRECOMPUTE_SAMPLING_H

#include <data/sampling.h>
#include <core/symmetries.h>
#include <core/args.h>
#include <fstream>
#include <iostream>
#include <string>

/* PDB Phantom Program Parameters ------------------------------------------ */
class Prog_Sampling_Parameters
{
public:
    Sampling mysampling;

    double sampling;

    double neighborhood;


    std::string sampling_file_root;

    FileName        fn_sym;

    int symmetry;

    int sym_order;

    // std::vector <Matrix1D<double> > symmetry_vectors;

    double max_tilt_angle;
    
    double min_tilt_angle;


public:
    Prog_Sampling_Parameters();

    void read(int argc, const char **argv);

    void usage();

    void show();

    void run();

    void get_sym_vectors(std::vector< Matrix1D<double > > &sym_points);

};
#endif