multireference_aligneability.h

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/***************************************************************************
 * Authors:     Javier Vargas (jvargas@cnb.csic.es) (2016)
 *
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/
#include <core/xmipp_program.h>
#include "validation_nontilt.h"
#include <math.h>
#include <core/metadata_db.h>
#include <string.h>
#include <data/mask.h>
#include <core/symmetries.h>

#ifndef MULTIREFERENCE_ALIGNEABILITY_H_
#define MULTIREFERENCE_ALIGNEABILITY_H_
//#define PI  3.14159265




class MultireferenceAligneability: public XmippProgram
{


public:
    FileName fnDir, fnSym, fin, finRef, fnInit, fnGallery, fnParticles, fnParticlesRef;

    bool donNotUseWeights;

    bool check_mirror;
    SymList SL;

    size_t rank, Nprocessors;

    MetaDataDb mdPartialParticles;

private:
    size_t Xdim,Ydim,Zdim,Ndim;
    //double sampling_rate   //COMMENTED


public:

    MultireferenceAligneability();

    void readParams();

    void defineParams();

    void run();

private:

    void write_projection_file();

    void calc_sumu(const MetaData & tempMd, double & sum_W, double & mirrorProb);

    void calc_sumw(const size_t num, double & sumw);

    void calc_sumw2(const size_t num, double & sumw, const MetaData & mdGallery);

    void obtainAngularAccuracy(const MetaData & tempMd, const MDRow & row, double & accuracy,double & accuracyMirror);

    virtual void gatherResults() {}

    virtual void synchronize() {}
};

#endif /* MULTIREFERENCE_ALIGNEABILITY_H_ */