mpi_volumeset_align.h

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/***************************************************************************
 *
 * Authors:  Mohamad Harastani mohamad.harastani@upmc.fr
 *           Slavica Jonic slavica.jonic@upmc.fr
 *           Carlos Oscar Sanchez Sorzano coss.eps@ceu.es
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 * Lab. de Bioingenieria, Univ. San Pablo CEU
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.uam.es'
 ***************************************************************************/

#include <memory>
#include "parallel/xmipp_mpi.h"
#include "reconstruction/volumeset_align.h"


class MpiProgVolumeSetAlign: public ProgVolumeSetAlign
{
private:
    std::shared_ptr<MpiNode> node;
    std::shared_ptr<MpiTaskDistributor> distributor;
    std::shared_ptr<MpiFileMutex> fileMutex;
    std::vector<size_t> imgsId;

    // main body
    void createWorkFiles() override;
    
    //Only master do starting progress bar stuff
    void startProcessing();
    
    //Only master show progress
    void showProgress();
    
    bool getImageToProcess(size_t &objId, size_t &objIndex) override;

    void finishProcessing();

    void writeVolumeParameters(const FileName &fnImg);

public:
    // Redefine read to initialize MPI environment
    //void read(int arg1, char **arg2);
    void read(int argc, char ** argv, bool reportErrors = true) override;
}
;//end of class MpiProgVolumeSetAlign