mpi_classify_CL2D_core_analysis.h

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/***************************************************************************
 *
 * Authors:    Carlos Oscar            coss@cnb.csic.es (2002)
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/
#ifndef _PROG_CLASSIFY_CL2D_CORE_ANALYSIS
#define _PROG_CLASSIFY_CL2D_CORE_ANALYSIS

#include <parallel/xmipp_mpi.h>

class CL2DBlock {
public:
    String   block;
    FileName fnLevel;
    FileName fnLevelCore;
    int      level;
};

std::ostream & operator << (std::ostream &out, const CL2DBlock &block);

enum ClassifyCL2DCoreAction
{
    COMPUTE_CORE,
    COMPUTE_STABLE_CORE
};

class ProgClassifyCL2DCore: public XmippProgram
{
public:
    FileName fnRoot;
    FileName fnODir;
    int NPCA;
    double thPCAZscore;
    int tolerance;
    ClassifyCL2DCoreAction action;
public:
    // Mpi node
    std::shared_ptr<MpiNode> node;
    // FileTaskDistributor
    std::unique_ptr<MpiTaskDistributor> taskDistributor;
    // CL2D blocks
    std::vector<CL2DBlock> blocks;
    // MaxLevel
    int maxLevel;
    // Projection size
    size_t Ydim, Xdim;
public:
    ProgClassifyCL2DCore(int argc, char **argv);

    void readParams();

    void show();

    void defineParams();

    void produceSideInfo();

    void produceClassInfo();

    void computeCores();

    void computeStableCores();

    void gatherResults(int firstLevel, const String &suffix);

    void run();
};
#endif