Xmipp
v3.23.11-Nereus
xmipp
libraries
reconstruction
image_eliminate_empty_particles.h
Go to the documentation of this file.
1
/***************************************************************************
2
* Authors: Tomas Majtner (tmajtner@cnb.csic.es)
3
*
4
* Unidad de Bioinformatica of Centro Nacional de Biotecnologia , CSIC
5
*
6
* This program is free software; you can redistribute it and/or modify
7
* it under the terms of the GNU General Public License as published by
8
* the Free Software Foundation; either version 2 of the License, or
9
* (at your option) any later version.
10
*
11
* This program is distributed in the hope that it will be useful,
12
* but WITHOUT ANY WARRANTY; without even the implied warranty of
13
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14
* GNU General Public License for more details.
15
*
16
* You should have received a copy of the GNU General Public License
17
* along with this program; if not, write to the Free Software
18
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
19
* 02111-1307 USA
20
*
21
* All comments concerning this program package may be sent to the
22
* e-mail address 'xmipp@cnb.csic.es'
23
***************************************************************************/
24
25
#ifndef _PROG_ELIMINATE_EMPTY_PARTICLES
26
#define _PROG_ELIMINATE_EMPTY_PARTICLES
27
28
#include <
core/xmipp_program.h
>
29
#include <
data/fourier_filter.h
>
30
34
class
ProgEliminateEmptyParticles
:
public
XmippProgram
35
{
36
public
:
38
FileName
fnIn
;
39
41
FileName
fnOut
;
42
44
FileName
fnElim
;
45
47
float
threshold
;
48
50
bool
addFeatures
;
51
53
bool
useDenoising
;
54
56
int
denoise
;
57
58
public
:
60
void
readParams
();
61
63
void
show
();
64
66
void
defineParams
();
67
69
void
run
();
70
};
72
#endif
ProgEliminateEmptyParticles::denoise
int denoise
Param for denoising.
Definition:
image_eliminate_empty_particles.h:56
ProgEliminateEmptyParticles::defineParams
void defineParams()
Define input parameters.
Definition:
image_eliminate_empty_particles.cpp:61
ProgEliminateEmptyParticles::useDenoising
bool useDenoising
Turning on denoising.
Definition:
image_eliminate_empty_particles.h:53
ProgEliminateEmptyParticles::show
void show()
Show.
Definition:
image_eliminate_empty_particles.cpp:45
ProgEliminateEmptyParticles::fnElim
FileName fnElim
Name of the eliminated particle metadata.
Definition:
image_eliminate_empty_particles.h:44
ProgEliminateEmptyParticles
Definition:
image_eliminate_empty_particles.h:34
FileName
Definition:
xmipp_filename.h:65
ProgEliminateEmptyParticles::run
void run()
Execute.
Definition:
image_eliminate_empty_particles.cpp:73
xmipp_program.h
fourier_filter.h
ProgEliminateEmptyParticles::fnIn
FileName fnIn
Name of the input metadata.
Definition:
image_eliminate_empty_particles.h:38
ProgEliminateEmptyParticles::addFeatures
bool addFeatures
Add features.
Definition:
image_eliminate_empty_particles.h:50
ProgEliminateEmptyParticles::readParams
void readParams()
Read input parameters.
Definition:
image_eliminate_empty_particles.cpp:33
ProgEliminateEmptyParticles::threshold
float threshold
Threshold for variance of variance.
Definition:
image_eliminate_empty_particles.h:47
ProgEliminateEmptyParticles::fnOut
FileName fnOut
Name of the output metadata.
Definition:
image_eliminate_empty_particles.h:41
XmippProgram
Definition:
xmipp_program.h:52
Generated by
1.8.13