ctf_correct_wiener3d.h

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/***************************************************************************
 *
 * Authors:     Sjors H.W. Scheres (scheres@cnb.csic.es)
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#include "core/metadata_vec.h"
#include "core/xmipp_program.h"
#include "data/fourier_filter.h"

class ProgCtfCorrectAmplitude3D: public XmippProgram
{
public:
    FileName fnIn;
    FileName fnRoot;

    double wienerConstant;

    double minFreq;

    bool isFlipped;
public:
    size_t Zdim, Ydim, Xdim;
    
    FourierFilter ctf;
    
    MetaDataVec ctfdat;

    std::vector< MultidimArray<double> > Vctfs1D, Vwien1D;

public:
    void readParams();

    void show();

    void defineParams();

    void produceSideInfo();

    void generateCTF1D(const FileName &fnCTF, 
               size_t nr_steps,
               MultidimArray<double> &CTF1D);

    void generateWienerFilters();

    void generateVolumes();

    void run();
};