ctf_correct_wiener2d.h

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/***************************************************************************
 * Authors:     AUTHOR_NAME (jvargas@cnb.csic.es)
 *
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef CTF_CORRECT_WIENER2D_H_
#define CTF_CORRECT_WIENER2D_H_

#include "core/xmipp_metadata_program.h"
#include "data/ctf.h"
#include "data/wiener2d.h"
#include "core/xmipp_image.h"
#include "data/filters.h"

class ProgCorrectWiener2D: public XmippMetadataProgram
{


public:
    /* Wiener class*/
    Wiener2D WF;

    bool phase_flipped;

    double  pad;

    bool isIsotropic;

    bool correct_envelope;

    double wiener_constant;

    double sampling_rate;

public:

    void readParams();

    void defineParams();

public:

    void processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut);

    void generateWienerFilter(MultidimArray<double> &Mwien, CTFDescription &ctf);

    void postProcess();
public:
    Image<double> img;

    CTFDescription ctf;

    size_t Ydim, Xdim;

    MultidimArray<double> Mwien;
    MultidimArray<std::complex<double> > Faux;
    FourierTransformer transformer;
};




#endif /* CTF_CORRECT_WIENER2D_H_ */