classify_first_split.h

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/***************************************************************************
 *
 * Authors:    Carlos Oscar Sanchez Sorzano coss@cnb.csic.es
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/

#ifndef _PROG_CLASSIFICATION_FIRST_SPLIT
#define _PROG_CLASSIFICATION_FIRST_SPLIT

#include <core/xmipp_program.h>
#include <data/mask.h>
#include <data/basic_pca.h>

class ProgClassifyFirstSplit: public XmippProgram
{
public:
    FileName fnClasses;
    FileName fnRoot;
    int Nrec;
    int Nsamples;
    FileName fnSym;
    bool externalMask;
    Mask mask;
    double alpha;
public:
    void readParams();

    void show();

    void defineParams();

    void run();

    void updateWithNewVolume(const MultidimArray<double> &V);

    // Extract vector from volume
    void volumeToVector(const MultidimArray<double> &V, MultidimArray<double> &v);

    // Fill volume with vector
    void vectorToVolume(const MultidimArray<double> &v, MultidimArray<double> &V);
public:
    MultidimArray<double> v;
    int Nvols;
    size_t maskSize;
    PCAonline pca;
};
#endif