#include <phantom.h>

Inheritance diagram for Oriented_Feature:

Collaboration diagram for Oriented_Feature:

Public Member Functions
void	prepare_Euler ()

void	assign (const Oriented_Feature &OF)

virtual void	rotate (const Matrix2D< double > &E)

Public Member Functions inherited from Feature
virtual void	prepare ()=0

void	assign (const Feature &F)

virtual void	rotate_center (const Matrix2D< double > &E)

virtual int	point_inside (const Matrix1D< double > &r, Matrix1D< double > &aux) const =0

int	point_inside (const Matrix1D< double > &r) const

virtual double	density_inside (const Matrix1D< double > &r, Matrix1D< double > &aux) const =0

int	voxel_inside (const Matrix1D< double > &r, Matrix1D< double > &aux1, Matrix1D< double > &aux2) const

int	voxel_inside (const Matrix1D< double > &r) const

double	voxel_inside_by_normalized_density (const Matrix1D< double > &r, Matrix1D< double > &aux1, Matrix1D< double > &aux2) const

int	intersects_sphere (const Matrix1D< double > &r, double radius, Matrix1D< double > &aux1, Matrix1D< double > &aux2, Matrix1D< double > &aux3) const

int	intersects_sphere (const Matrix1D< double > &r, double radius) const

Feature *	encircle (double radius=0) const

virtual Feature *	scale (double factor) const =0

Feature *	background (int back_mode, double back_param) const

virtual double	intersection (const Matrix1D< double > &direction, const Matrix1D< double > &passing_point, Matrix1D< double > &r, Matrix1D< double > &u) const =0

double	intersection (const Matrix1D< double > &direction, const Matrix1D< double > &passing_point) const

virtual double	volume () const =0

void	mean_variance_in_plane (Image< double > *V, double z, double &mean, double &var)

void	project_to (Projection &P, const Matrix2D< double > &VP, const Matrix2D< double > &PV) const

void	corners (const MultidimArray< double > &V, Matrix1D< double > &corner1, Matrix1D< double > &corner2)

void	draw_in (MultidimArray< double > &V, int color_mode=INTERNAL, double colour=-1)

void	sketch_in (MultidimArray< double > &V, double colour=2)

void	shift (double shiftX, double shiftY, double shiftZ)

void	selfApplyGeometry (const Matrix2D< double > &A)

virtual void	feat_printf (FILE *fh) const =0

virtual void	feat_printm (MetaData &MD, size_t id)=0

void	readCommon (char *line)

void	readCommon (MDRow &row)

void	read (MDRow &row)

virtual void	read_specific (const std::vector< double > &vector)=0

Public Attributes
double	rot
	First Euler angle. More...

double	tilt
	Second Euler angle. More...

double	psi
	Third Euler angle. More...

Matrix2D< double >	euler
	Euler matrix. More...

Matrix2D< double >	eulert
	Inverse Euler matrix. More...

Public Attributes inherited from Feature
std::string	type

char	add_assign

double	density

Matrix1D< double >	center

double	max_distance

Detailed Description

Oriented Features. The oriented features are defined in a canonical position (usually along Z axis) and then they are rotated after the 3 Euler angles. The corresponding Euler matrix is stored in the field "euler" while its inverse is in "eulert".

Definition at line 423 of file phantom.h.

Member Function Documentation

◆ assign()

void Oriented_Feature::assign ( const Oriented_Feature & OF )

Another function for assignment.

Definition at line 97 of file phantom.cpp.

 {
     *this = OF;
 }

◆ prepare_Euler()

void Oriented_Feature::prepare_Euler ( )

Compute Euler and inverse Euler matrices from the Euler angles.

Definition at line 102 of file phantom.cpp.

 {
     Euler_angles2matrix(rot, tilt, psi, euler);
     eulert = euler.transpose();
 }

◆ rotate()

void Oriented_Feature::rotate ( const Matrix2D< double > & E )

virtual

Rotate. Rotate this feature. The center as well as the feature itself are rotated.

Reimplemented from Feature.

Definition at line 164 of file phantom.cpp.

 {
     rotate_center(E);
     prepare();
     euler = euler * E;
     eulert = E.transpose() * eulert;
     Euler_matrix2angles(euler, rot, tilt, psi);
 }

Member Data Documentation

◆ euler

Matrix2D<double> Oriented_Feature::euler

Euler matrix.

Definition at line 436 of file phantom.h.

◆ eulert

Matrix2D<double> Oriented_Feature::eulert

Inverse Euler matrix.

Definition at line 439 of file phantom.h.

◆ psi

double Oriented_Feature::psi

Third Euler angle.

Definition at line 433 of file phantom.h.

◆ rot

double Oriented_Feature::rot

First Euler angle.

Definition at line 427 of file phantom.h.

◆ tilt

double Oriented_Feature::tilt

Second Euler angle.

Definition at line 430 of file phantom.h.

The documentation for this class was generated from the following files:

xmipp/libraries/data/phantom.h
xmipp/libraries/data/phantom.cpp

Public Member Functions

Public Attributes