#include <mpi_volume_homogenizer.h>

Inheritance diagram for MpiProgVolumeHomogenizer:

Collaboration diagram for MpiProgVolumeHomogenizer:

Public Member Functions
	MpiProgVolumeHomogenizer ()

	~MpiProgVolumeHomogenizer ()

void	read (int argc, char **argv)

void	synchronize ()
	Synchronize with other processors. More...

void	gatherResults ()
	Gather alignment. More...

Public Member Functions inherited from ProgVolumeHomogenizer
	ProgVolumeHomogenizer ()

void	readParams ()

void	defineParams ()

void	xmipp2Opencv (const MultidimArray< double > &xmippArray, cv::Mat &opencvMat)

void	convert2Uint8 (cv::Mat opencvDoubleMat, cv::Mat &opencvUintMat)

void	opencv2Xmipp (const cv::Mat &opencvMat, MultidimArray< double > &xmippArray)

void	run ()

void	parameterList (size_t imgSize, int maxParamsTrial, float *paramList)

Public Member Functions inherited from XmippProgram
const char *	getParam (const char *param, int arg=0)

const char *	getParam (const char param, const char subparam, int arg=0)

int	getIntParam (const char *param, int arg=0)

int	getIntParam (const char param, const char subparam, int arg=0)

double	getDoubleParam (const char *param, int arg=0)

double	getDoubleParam (const char param, const char subparam, int arg=0)

float	getFloatParam (const char *param, int arg=0)

float	getFloatParam (const char param, const char subparam, int arg=0)

void	getListParam (const char *param, StringVector &list)

int	getCountParam (const char *param)

bool	checkParam (const char *param)

bool	existsParam (const char *param)

void	addParamsLine (const String &line)

void	addParamsLine (const char *line)

ParamDef *	getParamDef (const char *param) const

virtual void	quit (int exit_code=0) const

virtual int	tryRun ()

void	initProgress (size_t total, size_t stepBin=60)

void	setProgress (size_t value=0)

void	endProgress ()

void	processDefaultComment (const char param, const char left)

void	setDefaultComment (const char param, const char comment)

virtual void	initComments ()

void	setProgramName (const char *name)

void	addUsageLine (const char *line, bool verbatim=false)

void	clearUsage ()

void	addExampleLine (const char *example, bool verbatim=true)

void	addSeeAlsoLine (const char *seeAlso)

void	addKeywords (const char *keywords)

const char *	name () const

virtual void	usage (int verb=0) const

virtual void	usage (const String &param, int verb=2)

int	version () const

virtual void	show () const

virtual void	read (int argc, const char **argv, bool reportErrors=true)

virtual void	read (int argc, char **argv, bool reportErrors=true)

void	read (const String &argumentsLine)

	XmippProgram ()

	XmippProgram (int argc, const char **argv)

virtual	~XmippProgram ()

Public Attributes
MpiNode *	node

Public Attributes inherited from ProgVolumeHomogenizer
FileName	fnVol

FileName	fnRef

FileName	fnSetOfImgIn

FileName	fnSetOfImgOut

int	winSize

double	cutFreq

MetaDataDb	mdPartialParticles

size_t	rank

size_t	Nprocessors

double	pyr_scale

int	levels

int	iterations

bool	addToInput

Public Attributes inherited from XmippProgram
bool	doRun

bool	runWithoutArgs

int	verbose
	Verbosity level. More...

int	debug

Additional Inherited Members
Protected Member Functions inherited from XmippProgram
void	defineCommons ()

Protected Attributes inherited from XmippProgram
int	errorCode

ProgramDef *	progDef
	Program definition and arguments parser. More...

std::map< String, CommentList >	defaultComments

int	argc
	Original command line arguments. More...

const char **	argv

Detailed Description

Validation parameters.

Definition at line 34 of file mpi_volume_homogenizer.h.

Constructor & Destructor Documentation

◆ MpiProgVolumeHomogenizer()

MpiProgVolumeHomogenizer::MpiProgVolumeHomogenizer ( )

Definition at line 29 of file mpi_volume_homogenizer.cpp.

 {
     node=NULL;
 }

◆ ~MpiProgVolumeHomogenizer()

MpiProgVolumeHomogenizer::~MpiProgVolumeHomogenizer ( )

Definition at line 34 of file mpi_volume_homogenizer.cpp.

 {
     delete node;
 }

Member Function Documentation

◆ gatherResults()

void MpiProgVolumeHomogenizer::gatherResults ( )

virtual

Gather alignment.

Reimplemented from ProgVolumeHomogenizer.

Definition at line 52 of file mpi_volume_homogenizer.cpp.

 {
     // Write all metadatas
 
 
     if (rank!=0)
     {
         FileName fnPartial=formatString("partial_node%03d.xmd",(int)rank);
         if (mdPartialParticles.size()>0)
             mdPartialParticles.write(fnPartial);
     }
 
     synchronize();
 
     // Now the master takes all of them
     if (rank==0)
     {
         MetaDataDb MDAux;
         for (size_t otherRank=1; otherRank<Nprocessors; ++otherRank)
         {
                 FileName fnP = formatString("partial_node%03d.xmd",(int)otherRank);
 
                 if (fnP.exists())
                 {
                     MDAux.read(fnP);
                     mdPartialParticles.unionAll(MDAux);
                     deleteFile(fnP);
                 }
         }
     }
 
     synchronize();
 
 }

◆ read()

void MpiProgVolumeHomogenizer::read	(	int	argc,
		char **	argv
	)

Definition at line 39 of file mpi_volume_homogenizer.cpp.

 {
     node = new MpiNode(argc, argv);
     rank = node->rank;
     Nprocessors = node->size;
     ProgVolumeHomogenizer::read(argc, (const char **)argv);
 }

◆ synchronize()

void MpiProgVolumeHomogenizer::synchronize ( )

virtual

Synchronize with other processors.

Reimplemented from ProgVolumeHomogenizer.

Definition at line 47 of file mpi_volume_homogenizer.cpp.

 {
     node->barrierWait();
 }

Member Data Documentation

◆ node

MpiNode* MpiProgVolumeHomogenizer::node

Definition at line 37 of file mpi_volume_homogenizer.h.

The documentation for this class was generated from the following files:

xmipp/applications/programs/mpi_volume_homogenizer/mpi_volume_homogenizer.h
xmipp/applications/programs/mpi_volume_homogenizer/mpi_volume_homogenizer.cpp

Public Member Functions

Public Attributes

Additional Inherited Members