#include <mpi_validation_nontilt.h>

Inheritance diagram for MpiProgValidationNonTilt:

Collaboration diagram for MpiProgValidationNonTilt:

Public Member Functions
void	read (int argc, char **argv)

void	synchronize ()
	Synchronize with other processors. More...

void	gatherClusterability ()
	Gather alignment. More...

Public Member Functions inherited from ProgValidationNonTilt
void	readParams ()

void	defineParams ()

void	run ()

	ProgValidationNonTilt ()

void	obtainSumU (const MetaData &tempMd, std::vector< double > &sum_u, std::vector< double > &H0)

void	obtainSumU_2 (const MetaData &mdGallery, const MetaData &tempMd, std::vector< double > &sum_u, std::vector< double > &H0)

void	obtainSumW (const MetaData &tempMd, double &sum_W, std::vector< double > &sum_u, std::vector< double > &H, const double factor)

Public Member Functions inherited from XmippProgram
const char *	getParam (const char *param, int arg=0)

const char *	getParam (const char param, const char subparam, int arg=0)

int	getIntParam (const char *param, int arg=0)

int	getIntParam (const char param, const char subparam, int arg=0)

double	getDoubleParam (const char *param, int arg=0)

double	getDoubleParam (const char param, const char subparam, int arg=0)

float	getFloatParam (const char *param, int arg=0)

float	getFloatParam (const char param, const char subparam, int arg=0)

void	getListParam (const char *param, StringVector &list)

int	getCountParam (const char *param)

bool	checkParam (const char *param)

bool	existsParam (const char *param)

void	addParamsLine (const String &line)

void	addParamsLine (const char *line)

ParamDef *	getParamDef (const char *param) const

virtual void	quit (int exit_code=0) const

virtual int	tryRun ()

void	initProgress (size_t total, size_t stepBin=60)

void	setProgress (size_t value=0)

void	endProgress ()

void	processDefaultComment (const char param, const char left)

void	setDefaultComment (const char param, const char comment)

virtual void	initComments ()

void	setProgramName (const char *name)

void	addUsageLine (const char *line, bool verbatim=false)

void	clearUsage ()

void	addExampleLine (const char *example, bool verbatim=true)

void	addSeeAlsoLine (const char *seeAlso)

void	addKeywords (const char *keywords)

const char *	name () const

virtual void	usage (int verb=0) const

virtual void	usage (const String &param, int verb=2)

int	version () const

virtual void	show () const

virtual void	read (int argc, const char **argv, bool reportErrors=true)

virtual void	read (int argc, char **argv, bool reportErrors=true)

void	read (const String &argumentsLine)

	XmippProgram ()

	XmippProgram (int argc, const char **argv)

virtual	~XmippProgram ()

Public Attributes
std::unique_ptr< MpiNode >	node

Public Attributes inherited from ProgValidationNonTilt
FileName	fnDir

FileName	fnSym

FileName	fnInit

FileName	fnParticles

MetaDataDb	mdPartial

size_t	rank

size_t	Nprocessors

bool	useSignificant

double	significance_noise

Public Attributes inherited from XmippProgram
bool	doRun

bool	runWithoutArgs

int	verbose
	Verbosity level. More...

int	debug

Additional Inherited Members
Protected Member Functions inherited from XmippProgram
void	defineCommons ()

Protected Attributes inherited from XmippProgram
int	errorCode

ProgramDef *	progDef
	Program definition and arguments parser. More...

std::map< String, CommentList >	defaultComments

int	argc
	Original command line arguments. More...

const char **	argv

Detailed Description

Validation parameters.

Definition at line 37 of file mpi_validation_nontilt.h.

Member Function Documentation

◆ gatherClusterability()

void MpiProgValidationNonTilt::gatherClusterability ( )

virtual

Gather alignment.

Reimplemented from ProgValidationNonTilt.

Definition at line 41 of file mpi_validation_nontilt.cpp.

 {
     /*
     // Share all Ps and image index
     MultidimArray<double> aux;
     if (rank==0)
         aux.resizeNoCopy(cc);
     MPI_Reduce(MULTIDIM_ARRAY(weight), MULTIDIM_ARRAY(aux), MULTIDIM_SIZE(weight), MPI_DOUBLE, MPI_MAX, 0, MPI_COMM_WORLD);
     if (rank==0)
         weight=aux;
     MPI_Reduce(MULTIDIM_ARRAY(cc), MULTIDIM_ARRAY(aux), MULTIDIM_SIZE(cc), MPI_DOUBLE, MPI_MAX, 0, MPI_COMM_WORLD);
     if (rank==0)
         cc=aux;
 */
     // Write all metadatas
     if (rank!=0)
     {
         FileName fnPartial=formatString("%s/partial_node%03d.xmd",fnDir.c_str(),(int)rank);
         if (mdPartial.size()>0)
             mdPartial.write(fnPartial);
     }
 
     synchronize();
 
     // Now the master takes all of them
     if (rank==0)
     {
         MetaDataDb MDAux;
         for (size_t otherRank=1; otherRank<Nprocessors; ++otherRank)
         {
                 FileName fnP = formatString("%s/partial_node%03d.xmd",fnDir.c_str(),(int)otherRank);
 
                 if (fnP.exists())
                 {
                     MDAux.read(fnP);
                     mdPartial.unionAll(MDAux);
                     deleteFile(fnP);
                 }
         }
     }
 
     synchronize();
 
 }

◆ read()

void MpiProgValidationNonTilt::read	(	int	argc,
		char **	argv
	)

Definition at line 28 of file mpi_validation_nontilt.cpp.

 {
     node = std::make_unique<MpiNode>(argc, argv);
     rank = node->rank;
     Nprocessors = node->size;
     ProgValidationNonTilt::read(argc, (const char **)argv);
 }

◆ synchronize()

void MpiProgValidationNonTilt::synchronize ( )

virtual

Synchronize with other processors.

Reimplemented from ProgValidationNonTilt.

Definition at line 36 of file mpi_validation_nontilt.cpp.

 {
     node->barrierWait();
 }

Member Data Documentation

◆ node

std::unique_ptr<MpiNode> MpiProgValidationNonTilt::node

Definition at line 40 of file mpi_validation_nontilt.h.

The documentation for this class was generated from the following files:

xmipp/libraries/parallel/mpi_validation_nontilt.h
xmipp/libraries/parallel/mpi_validation_nontilt.cpp

Public Member Functions

Public Attributes