#include <mpi_reconstruct_admm.h>

Inheritance diagram for MpiProgReconstructADMM:

Collaboration diagram for MpiProgReconstructADMM:

Public Member Functions
	MpiProgReconstructADMM ()=default

	MpiProgReconstructADMM (const MpiProgReconstructADMM &)=delete

	MpiProgReconstructADMM (const MpiProgReconstructADMM &&)=delete

	~MpiProgReconstructADMM ()

MpiProgReconstructADMM &	operator= (const MpiProgReconstructADMM &)=delete

MpiProgReconstructADMM &	operator= (const MpiProgReconstructADMM &&)=delete

void	read (int argc, char **argv)

void	synchronize ()

void	shareVolume (MultidimArray< double > &V)

Public Member Functions inherited from ProgReconsADMM
	ProgReconsADMM ()

void	defineParams ()

void	readParams ()

void	show ()

void	run ()

void	produceSideInfo ()

void	project (double rot, double tilt, double psi, MultidimArray< double > &P, bool adjoint=false, double weight=1.)

void	project (const Matrix1D< double > &r1, const Matrix1D< double > &r2, MultidimArray< double > &P, bool adjoint=false, double weight=1.)

void	constructHtb ()

void	computeHtKH (MultidimArray< double > &kernelV)

void	addRegularizationTerms ()

void	applyKernel3D (MultidimArray< double > &x, MultidimArray< double > &AtAx)

void	applyLFilter (MultidimArray< std::complex< double > > &fourierL, bool adjoint=false)

void	applyLtFilter (MultidimArray< std::complex< double > > &fourierL, MultidimArray< double > &u, MultidimArray< double > &d)

void	applyConjugateGradient ()

void	doPOCSProjection ()

void	updateUD ()

void	produceVolume ()

Public Member Functions inherited from XmippProgram
const char *	getParam (const char *param, int arg=0)

const char *	getParam (const char param, const char subparam, int arg=0)

int	getIntParam (const char *param, int arg=0)

int	getIntParam (const char param, const char subparam, int arg=0)

double	getDoubleParam (const char *param, int arg=0)

double	getDoubleParam (const char param, const char subparam, int arg=0)

float	getFloatParam (const char *param, int arg=0)

float	getFloatParam (const char param, const char subparam, int arg=0)

void	getListParam (const char *param, StringVector &list)

int	getCountParam (const char *param)

bool	checkParam (const char *param)

bool	existsParam (const char *param)

void	addParamsLine (const String &line)

void	addParamsLine (const char *line)

ParamDef *	getParamDef (const char *param) const

virtual void	quit (int exit_code=0) const

virtual int	tryRun ()

void	initProgress (size_t total, size_t stepBin=60)

void	setProgress (size_t value=0)

void	endProgress ()

void	processDefaultComment (const char param, const char left)

void	setDefaultComment (const char param, const char comment)

virtual void	initComments ()

void	setProgramName (const char *name)

void	addUsageLine (const char *line, bool verbatim=false)

void	clearUsage ()

void	addExampleLine (const char *example, bool verbatim=true)

void	addSeeAlsoLine (const char *seeAlso)

void	addKeywords (const char *keywords)

const char *	name () const

virtual void	usage (int verb=0) const

virtual void	usage (const String &param, int verb=2)

int	version () const

virtual void	show () const

virtual void	read (int argc, const char **argv, bool reportErrors=true)

virtual void	read (int argc, char **argv, bool reportErrors=true)

void	read (const String &argumentsLine)

	XmippProgram ()

	XmippProgram (int argc, const char **argv)

virtual	~XmippProgram ()

Public Attributes
MpiNode *	node =nullptr

Public Attributes inherited from ProgReconsADMM
FileName	fnIn

FileName	fnRoot

FileName	fnFirst

FileName	fnHtb

FileName	fnHtKH

String	kernelShape

double	a

double	alpha

double	mu

double	lambda

double	lambda1

double	Ti

double	Tp

bool	useWeights

bool	useCTF

int	Ncgiter

int	Nadmmiter

bool	positivity

bool	applyMask

double	Ts

Mask	mask

String	symmetry

bool	saveIntermediate

size_t	Nprocs

size_t	rank

AdmmKernel	kernel

Image< double >	CHtb

Image< double >	Ck

Image< double >	Vk

MetaDataVec	mdIn

MultidimArray< std::complex< double > >	fourierKernelV

MultidimArray< double >	paddedx

FourierTransformer	transformerPaddedx

FourierTransformer	transformerL

MultidimArray< double >	ux

MultidimArray< double >	uy

MultidimArray< double >	uz

MultidimArray< double >	dx

MultidimArray< double >	dy

MultidimArray< double >	dz

MultidimArray< double >	ud

MultidimArray< std::complex< double > >	fourierLx

MultidimArray< std::complex< double > >	fourierLy

MultidimArray< std::complex< double > >	fourierLz

SymList	SL

Public Attributes inherited from XmippProgram
bool	doRun

bool	runWithoutArgs

int	verbose
	Verbosity level. More...

int	debug

Additional Inherited Members
Protected Member Functions inherited from XmippProgram
void	defineCommons ()

Protected Attributes inherited from XmippProgram
int	errorCode

ProgramDef *	progDef
	Program definition and arguments parser. More...

std::map< String, CommentList >	defaultComments

int	argc
	Original command line arguments. More...

const char **	argv

Detailed Description

Significant reconstruction parameters.

Definition at line 37 of file mpi_reconstruct_admm.h.

Constructor & Destructor Documentation

◆ MpiProgReconstructADMM() [1/3]

MpiProgReconstructADMM::MpiProgReconstructADMM ( )

default

◆ MpiProgReconstructADMM() [2/3]

MpiProgReconstructADMM::MpiProgReconstructADMM ( const MpiProgReconstructADMM & )

delete

◆ MpiProgReconstructADMM() [3/3]

MpiProgReconstructADMM::MpiProgReconstructADMM ( const MpiProgReconstructADMM && )

delete

◆ ~MpiProgReconstructADMM()

MpiProgReconstructADMM::~MpiProgReconstructADMM ( )

Definition at line 28 of file mpi_reconstruct_admm.cpp.

 {
     delete node;
 }

Member Function Documentation

◆ operator=() [1/2]

MpiProgReconstructADMM& MpiProgReconstructADMM::operator= ( const MpiProgReconstructADMM & )

delete

◆ operator=() [2/2]

MpiProgReconstructADMM& MpiProgReconstructADMM::operator= ( const MpiProgReconstructADMM && )

delete

◆ read()

void MpiProgReconstructADMM::read	(	int	argc,
		char **	argv
	)

Definition at line 33 of file mpi_reconstruct_admm.cpp.

 {
     node = new MpiNode(argc, argv);
     rank = node->rank;
     Nprocs = node->size;
 
     ProgReconsADMM::read(argc, (const char **)argv);
 }

◆ shareVolume()

void MpiProgReconstructADMM::shareVolume ( MultidimArray< double > & V )

virtual

Reimplemented from ProgReconsADMM.

Definition at line 47 of file mpi_reconstruct_admm.cpp.

 {
     MPI_Allreduce(MPI_IN_PLACE, MULTIDIM_ARRAY(V), MULTIDIM_SIZE(V), MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
     synchronize();
 }

◆ synchronize()

void MpiProgReconstructADMM::synchronize ( )

virtual

Reimplemented from ProgReconsADMM.

Definition at line 42 of file mpi_reconstruct_admm.cpp.

 {
     node->barrierWait();
 }

Member Data Documentation

◆ node

MpiNode* MpiProgReconstructADMM::node =nullptr

Definition at line 40 of file mpi_reconstruct_admm.h.

The documentation for this class was generated from the following files:

xmipp/legacy/libraries/parallel/mpi_reconstruct_admm.h
xmipp/legacy/libraries/parallel/mpi_reconstruct_admm.cpp

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MpiProgReconstructADMM() [1/3]

◆ MpiProgReconstructADMM() [2/3]

◆ MpiProgReconstructADMM() [3/3]

◆ ~MpiProgReconstructADMM()

Member Function Documentation

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ read()

◆ shareVolume()

◆ synchronize()

Member Data Documentation

◆ node