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Xmipp
v3.23.11-Nereus
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Xmipp
v3.23.11-Nereus
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This is the complete list of members for ImageBase, including all inherited members.
| _exists | ImageBase | protected |
| _read(const FileName &name, ImageFHandler *hFile, DataMode datamode=DATA, size_t select_img=ALL_IMAGES, bool mapData=false) | ImageBase | protected |
| _readBatch(const FileName &name, ImageFHandler *hFile, size_t start_img, size_t batch_size, DataMode datamode=DATA, bool mapData=false) | ImageBase | protected |
| _write(const FileName &name, ImageFHandler *hFile, size_t select_img=ALL_IMAGES, bool isStack=false, int mode=WRITE_OVERWRITE, CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| aDimFile | ImageBase | protected |
| applyGeo(const MetaData &md, size_t objId, const ApplyGeoParams ¶ms=DefaultApplyGeoParams) | ImageBase | |
| applyGeo(const MDRow &row, bool only_apply_shifts=false, bool wrap=xmipp_transformation::WRAP)=0 | ImageBase | protectedpure virtual |
| axisOrder | ImageBase | protected |
| castTiffLine2T(size_t offset, char *tif_buf, unsigned int y, unsigned int imageWidth, unsigned int imageLength, unsigned short samplesPerPixel, DataType datatype) | ImageBase | protected |
| castTiffTile2T(size_t offset, char *tif_buf, unsigned int x, unsigned int y, unsigned int imageWidth, unsigned int imageLength, unsigned int tileWidth, unsigned int tileLength, unsigned short samplesPerPixel, DataType datatype) | ImageBase | protected |
| checkMmapT(DataType datatype)=0 | ImageBase | pure virtual |
| clear()=0 | ImageBase | pure virtual |
| clearHeader() | ImageBase | |
| closeFile(ImageFHandler *hFile=NULL) const | ImageBase | protected |
| copy(const ImageBase &other) | ImageBase | |
| dataFName | ImageBase | protected |
| dataMode | ImageBase | protected |
| datatype() const | ImageBase | |
| datatypeH5(hid_t dataset) | ImageBase | protected |
| datatypeRAW(String strDT) | ImageBase | protected |
| datatypeTIFF(TIFFDirHead dHead) | ImageBase | protected |
| defaultAxisOrder | ImageBase | protectedstatic |
| fhdf5 | ImageBase | protected |
| fhed | ImageBase | protected |
| filename | ImageBase | protected |
| fimg | ImageBase | protected |
| flip(const size_t n=0) const | ImageBase | |
| getCastConvertPageFromT(size_t offset, char *page, DataType datatype, size_t pageSize, double min0, double max0, CastWriteMode castMode=CW_CONVERT) const =0 | ImageBase | protectedpure virtual |
| getDimensions(size_t &Xdim, size_t &Ydim, size_t &Zdim, size_t &Ndim) const | ImageBase | |
| getDimensions(ArrayDim &aDim) | ImageBase | inline |
| getDimensions() | ImageBase | inline |
| getEulerAngles(double &rot, double &tilt, double &psi, const size_t n=0) const | ImageBase | |
| getGeometry(const size_t n=0) | ImageBase | inline |
| getInfo(ImageInfo &imgInfo) const | ImageBase | |
| getInfo(const FileName &name, ImageInfo &imgInfo) | ImageBase | |
| getOffsetAndSwap(size_t &_offset, int &_swap) const | ImageBase | inline |
| getPageFromT(size_t offset, char *page, DataType datatype, size_t pageSize)=0 | ImageBase | protectedpure virtual |
| getPreview(ImageBase *imgOut, size_t Xdim, size_t Ydim=0, int select_slice=CENTRAL_SLICE, size_t select_img=FIRST_IMAGE)=0 | ImageBase | pure virtual |
| getScale(double &scale, const size_t n=0) | ImageBase | inline |
| getShifts(double &xoff, double &yoff, double &zoff, const size_t n=0) const | ImageBase | |
| getSize() const =0 | ImageBase | pure virtual |
| getSwap() const | ImageBase | inline |
| getTransformationMatrix(Matrix2D< double > &A, bool only_apply_shifts=false, const size_t n=0)=0 | ImageBase | pure virtual |
| H5Datatype(DataType datatype) | ImageBase | protected |
| hFile | ImageBase | protected |
| individualContainsLabel(MDLabel label) const | ImageBase | inline |
| init() | ImageBase | |
| initGeometry(const size_t n=0) | ImageBase | |
| isComplex() const | ImageBase | inline |
| isComplexImage(const FileName &name) | ImageBase | inline |
| isComplexT() const =0 | ImageBase | pure virtual |
| isImage(const FileName &name) | ImageBase | |
| isMapped() | ImageBase | inline |
| isRealImage(const FileName &name) | ImageBase | inline |
| mainContainsLabel(MDLabel label) const | ImageBase | inline |
| mapFile2Write(size_t Xdim, size_t Ydim, size_t Zdim, const FileName &_filename, bool createTempFile=false, size_t select_img=APPEND_IMAGE, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | |
| mappedOffset | ImageBase | protected |
| mappedSize | ImageBase | protected |
| MD | ImageBase | |
| mdaBase | ImageBase | |
| MDMainHeader | ImageBase | |
| mFd | ImageBase | protected |
| mirrorY()=0 | ImageBase | pure virtual |
| mmapFile()=0 | ImageBase | protectedpure virtual |
| mmapOnRead | ImageBase | protected |
| mmapOnWrite | ImageBase | protected |
| movePointerTo(int select_slice=ALL_SLICES, size_t select_img=ALL_IMAGES)=0 | ImageBase | pure virtual |
| munmapFile()=0 | ImageBase | protectedpure virtual |
| myT() const =0 | ImageBase | pure virtual |
| name() const | ImageBase | inline |
| offset | ImageBase | protected |
| openFile(const FileName &name, int mode=WRITE_READONLY) const | ImageBase | protected |
| operator<<(std::ostream &o, const ImageBase &I) | ImageBase | friend |
| psi(const size_t n=0) const | ImageBase | |
| read(const FileName &name, DataMode datamode=DATA, size_t select_img=ALL_IMAGES, bool mapData=false, int mode=WRITE_READONLY) | ImageBase | |
| readApplyGeo(const FileName &name, const MDRow &row, const ApplyGeoParams ¶ms=DefaultApplyGeoParams) | ImageBase | |
| readApplyGeo(const FileName &name, const MetaData &md, size_t objId, const ApplyGeoParams ¶ms=DefaultApplyGeoParams) | ImageBase | |
| readApplyGeo(const MetaData &md, size_t objId, const ApplyGeoParams ¶ms=DefaultApplyGeoParams) | ImageBase | |
| readBatch(const FileName &name, size_t start_img, size_t batch_size, DataMode datamode=DATA, bool mapData=false, int mode=WRITE_READONLY) | ImageBase | |
| readData(FILE *fimg, size_t select_img, DataType datatype, size_t pad)=0 | ImageBase | protectedpure virtual |
| readData4bit(FILE *fimg, size_t select_img, DataType datatype, size_t pad)=0 | ImageBase | protectedpure virtual |
| readDM3(size_t img_select, bool isStack=false) | ImageBase | protected |
| readDM4(size_t img_select, bool isStack=false) | ImageBase | protected |
| readEER(size_t select_img) | ImageBase | protected |
| readEM(size_t select_img, bool isStack=false) | ImageBase | protected |
| readHDF5(size_t select_img) | ImageBase | protected |
| readIMAGIC(size_t img_select) | ImageBase | protected |
| readINF(size_t img_select, bool isStack=false) | ImageBase | protected |
| readJPEG(size_t select_img) | ImageBase | protected |
| readMapped(const FileName &name, size_t select_img=ALL_IMAGES, int mode=WRITE_READONLY) | ImageBase | |
| readMRC(size_t select_img, bool isStack=false) | ImageBase | protected |
| readMRC(size_t start_img, size_t batch_size, bool isStack=false) | ImageBase | protected |
| readOrReadMapped(const FileName &name, size_t select_img=ALL_IMAGES, int mode=WRITE_READONLY) | ImageBase | |
| readOrReadPreview(const FileName &name, size_t Xdim, size_t Ydim, int select_slice=CENTRAL_SLICE, size_t select_img=FIRST_IMAGE, bool mapData=false) | ImageBase | |
| readPIF(size_t select_img) | ImageBase | protected |
| readPreview(const FileName &name, size_t Xdim, size_t Ydim=0, int select_slice=CENTRAL_SLICE, size_t select_img=FIRST_IMAGE)=0 | ImageBase | pure virtual |
| readRange(const FileName &name, size_t start_img, size_t end_img, DataMode datamode=DATA, bool mapData=false, int mode=WRITE_READONLY) | ImageBase | |
| readRAW(size_t select_img, bool isStack=false) | ImageBase | protected |
| readSPE(size_t select_img, bool isStack=false) | ImageBase | protected |
| readSPIDER(size_t select_img) | ImageBase | protected |
| readSPIDER(size_t start_img, size_t batch_size) | ImageBase | protected |
| readTIA(int img_select, bool isStack=false) | ImageBase | protected |
| readTIFF(size_t select_img, bool isStack=false) | ImageBase | protected |
| rename(const FileName &name) | ImageBase | inline |
| replaceNsize | ImageBase | protected |
| rot(const size_t n=0) const | ImageBase | |
| samplingRateX() const | ImageBase | |
| scale(const size_t n=0) const | ImageBase | |
| selfApplyGeometry(int SplineDegree, bool wrap, bool only_apply_shifts)=0 | ImageBase | pure virtual |
| setADimFile(ArrayDim aDim) | ImageBase | inline |
| setDataMode(DataMode mode) | ImageBase | inline |
| setDatatype(DataType datatype) | ImageBase | protected |
| setDimensions(int Xdim, int Ydim, int Zdim, size_t Ndim)=0 | ImageBase | pure virtual |
| setDimensions(ArrayDim &aDim) | ImageBase | virtual |
| setEulerAngles(double rot, double tilt, double psi, const size_t n=0) | ImageBase | |
| setFlip(bool flip, const size_t n=0) | ImageBase | inline |
| setGeo(const MDRow &row, size_t n=0) | ImageBase | |
| setName(const FileName &_filename) | ImageBase | inline |
| setPage2T(size_t offset, char *page, DataType datatype, size_t pageSize)=0 | ImageBase | protectedpure virtual |
| setPsi(double psi, const size_t n=0) | ImageBase | inline |
| setRot(double rot, const size_t n=0) | ImageBase | inline |
| setScale(double scale, const size_t n=0) | ImageBase | inline |
| setShifts(double xoff, double yoff, double zoff=0., const size_t n=0) | ImageBase | |
| setTilt(double tilt, const size_t n=0) | ImageBase | inline |
| setWeight(double weight, const size_t n=0) | ImageBase | inline |
| setXoff(double xoff, const size_t n=0) | ImageBase | inline |
| setYoff(double yoff, const size_t n=0) | ImageBase | inline |
| setZoff(double zoff, const size_t n=0) | ImageBase | inline |
| sumWithFile(const FileName &fn)=0 | ImageBase | pure virtual |
| swap | ImageBase | protected |
| swapOnWrite() | ImageBase | inline |
| swapPage(char *page, size_t pageNrElements, DataType datatype, int swap=1) | ImageBase | |
| swapWrite | ImageBase | protected |
| tempFilename | ImageBase | protected |
| tif | ImageBase | protected |
| tilt(const size_t n=0) const | ImageBase | |
| transform | ImageBase | protected |
| virtualOffset | ImageBase | protected |
| weight(const size_t n=0) const | ImageBase | |
| write(const FileName &name="", size_t select_img=ALL_IMAGES, bool isStack=false, int mode=WRITE_OVERWRITE, CastWriteMode castMode=CW_CAST, int _swapWrite=0) | ImageBase | |
| writeData(FILE *fimg, size_t offset, DataType wDType, size_t datasize_n, CastWriteMode castMode=CW_CAST)=0 | ImageBase | protectedpure virtual |
| writeDM3(size_t img_select, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeDM4(size_t img_select, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeEM(size_t select_img=ALL_IMAGES, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeHDF5(size_t select_img, bool isStack=false, int mode=WRITE_OVERWRITE, String bitDepth="", CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| writeIMAGIC(size_t img_select=ALL_IMAGES, int mode=WRITE_OVERWRITE, const String &bitDepth="", CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| writeINF(size_t img_select, bool isStack=false, int mode=WRITE_OVERWRITE, String bitDepth="", CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| writeJPEG(size_t select_img, bool isStack=false, int mode=WRITE_OVERWRITE, String bitDepth="", CastWriteMode castMode=CW_CONVERT) | ImageBase | protected |
| writeMRC(size_t select_img, bool isStack=false, int mode=WRITE_OVERWRITE, const String &bitDepth="", CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| writePageAsDatatype(FILE *fimg, DataType datatype, size_t datasize_n)=0 | ImageBase | pure virtual |
| writePIF(size_t select_img=ALL_IMAGES, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeSPE(size_t select_img, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeSPIDER(size_t select_img=ALL_IMAGES, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeTIA(int img_select, bool isStack=false, int mode=WRITE_OVERWRITE) | ImageBase | protected |
| writeTIFF(size_t select_img, bool isStack=false, int mode=WRITE_OVERWRITE, String bitDepth="", CastWriteMode castMode=CW_CAST) | ImageBase | protected |
| Xoff(const size_t n=0) const | ImageBase | |
| Yoff(const size_t n=0) const | ImageBase | |
| Zoff(const size_t n=0) const | ImageBase | |
| ~ImageBase() | ImageBase | virtual |
1.8.13