adjust_volume_grey_levels.h

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/***************************************************************************
 *
 * Authors:     Carlos Oscar S. Sorzano (coss@cnb.csic.es)
 *
 * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
 * 02111-1307  USA
 *
 *  All comments concerning this program package may be sent to the
 *  e-mail address 'xmipp@cnb.csic.es'
 ***************************************************************************/
#ifndef _PROG_ADJUST_VOLUME_HH
#define _PROG_ADJUST_VOLUME_HH

#include "core/metadata_vec.h"
#include "core/xmipp_program.h"
#include "core/xmipp_filename.h"
#include "core/xmipp_image.h"

/* Adjust volume program*/
class ProgAdjustVolume: public XmippProgram
{
protected:
    FileName fn_vol;
    FileName fn_sel;
    FileName fn_out;
    bool optimize;
    double probb_eval;
    // Create temp file
    bool tempFile;

public:
    // Input volume
    Image<double> ImIn;
    MultidimArray<double> V;
    // SelFile
    MetaDataVec SF;

protected:
    void defineParams();
    void readParams();

    void show();

    void apply(MultidimArray<float> &output_volume);

public:
    void run();

    double mismatching(double a, double b);
};
#endif