project_crystal.h File Reference

#include "project.h"

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Classes
class	Crystal_Projection_Parameters

Functions
void	project_crystal (Phantom &phantom, Projection &P, const ParametersProjection &prm, PROJECT_Side_Info &side, const Crystal_Projection_Parameters &prm_crystal, float rot, float tilt, float psi)
void	find_crystal_limits (const Matrix1D< double > &proj_corner1, const Matrix1D< double > &proj_corner2, const Matrix1D< double > &corner1, const Matrix1D< double > &corner2, const Matrix1D< double > &a, const Matrix1D< double > &b, int &iamin, int &iamax, int &ibmin, int &ibmax)
void	move_following_spiral (Matrix1D< double > &r, const MultidimArray< int > &visited)
void	fill_cell_positions (Projection &P, Matrix1D< double > &aproj, Matrix1D< double > &bproj, Matrix1D< double > &aprojd, Matrix1D< double > &bprojd, Matrix1D< double > &corner1, Matrix1D< double > &corner2, const Crystal_Projection_Parameters &prm_crystal, MultidimArray< double > &cell_shiftX, MultidimArray< double > &cell_shiftY, MultidimArray< double > &cell_shiftZ, MultidimArray< int > &cell_inside, MultidimArray< double > &exp_shifts_matrix_X, MultidimArray< double > &exp_shifts_matrix_Y, MultidimArray< double > &exp_shifts_matrix_Z)
void	init_shift_matrix (const Crystal_Projection_Parameters &prm_crystal, MultidimArray< int > &cell_inside, MultidimArray< double > &exp_shifts_matrix_X, MultidimArray< double > &exp_shifts_matrix_Y, MultidimArray< double > &exp_shifts_matrix_Z, MultidimArray< double > &exp_normal_shifts_matrix_X, MultidimArray< double > &exp_normal_shifts_matrix_Y, MultidimArray< double > &exp_normal_shifts_matrix_Z, double param_file_scale)