| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| allowIntensity | ProgVolumeToPseudoatoms | |
| allowMovement | ProgVolumeToPseudoatoms | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| atoms | ProgVolumeToPseudoatoms | |
| barrier | ProgVolumeToPseudoatoms | |
| binarize | ProgVolumeToPseudoatoms | |
| checkParam(const char *param) | XmippProgram | |
| clearUsage() | XmippProgram | |
| computeAverage(int k, int i, int j, MultidimArray< double > &V) | ProgVolumeToPseudoatoms | |
| debug | XmippProgram | |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineParams() | ProgVolumeToPseudoatoms | virtual |
| dontScale | ProgVolumeToPseudoatoms | |
| doRun | XmippProgram | |
| drawApproximation() | ProgVolumeToPseudoatoms | |
| drawGaussian(double k, double i, double j, MultidimArray< double > &V, double intensity) | ProgVolumeToPseudoatoms | |
| endProgress() | XmippProgram | |
| energyDiff | ProgVolumeToPseudoatoms | |
| energyOriginal | ProgVolumeToPseudoatoms | |
| errorCode | XmippProgram | protected |
| evaluateRegion(const MultidimArray< double > ®ion) const | ProgVolumeToPseudoatoms | |
| existsParam(const char *param) | XmippProgram | |
| extractRegion(int idxGaussian, MultidimArray< double > ®ion, bool extended=false) const | ProgVolumeToPseudoatoms | |
| Filter | ProgVolumeToPseudoatoms | |
| fnOut | ProgVolumeToPseudoatoms | |
| fnVol | ProgVolumeToPseudoatoms | |
| gaussianTable | ProgVolumeToPseudoatoms | |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| growSeeds | ProgVolumeToPseudoatoms | |
| initComments() | XmippProgram | virtual |
| initialSeeds | ProgVolumeToPseudoatoms | |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| insertRegion(const MultidimArray< double > ®ion) | ProgVolumeToPseudoatoms | |
| intensityColumn | ProgVolumeToPseudoatoms | |
| intensityFraction | ProgVolumeToPseudoatoms | |
| mask_prm | ProgVolumeToPseudoatoms | |
| minDistance | ProgVolumeToPseudoatoms | |
| name() const | XmippProgram | |
| Nclosest | ProgVolumeToPseudoatoms | |
| numThreads | ProgVolumeToPseudoatoms | |
| optimizeCurrentAtoms() | ProgVolumeToPseudoatoms | |
| optimizeCurrentAtomsThread(void *threadArgs) | ProgVolumeToPseudoatoms | static |
| penalty | ProgVolumeToPseudoatoms | |
| percentageDiff | ProgVolumeToPseudoatoms | |
| percentil1 | ProgVolumeToPseudoatoms | |
| placeSeeds(int Nseeds) | ProgVolumeToPseudoatoms | |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| produceSideInfo() | ProgVolumeToPseudoatoms | |
| progDef | XmippProgram | protected |
| quit(int exit_code=0) const | XmippProgram | virtual |
| range | ProgVolumeToPseudoatoms | |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgVolumeToPseudoatoms | virtual |
| removeSeeds(int Nseeds) | ProgVolumeToPseudoatoms | |
| removeTooCloseSeeds() | ProgVolumeToPseudoatoms | |
| run() | ProgVolumeToPseudoatoms | virtual |
| runWithoutArgs | XmippProgram | |
| sampling | ProgVolumeToPseudoatoms | |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| show() const | ProgVolumeToPseudoatoms | virtual |
| sigma | ProgVolumeToPseudoatoms | |
| sigma3 | ProgVolumeToPseudoatoms | |
| smallAtom | ProgVolumeToPseudoatoms | |
| stop | ProgVolumeToPseudoatoms | |
| targetError | ProgVolumeToPseudoatoms | |
| threadArgs | ProgVolumeToPseudoatoms | |
| threadIds | ProgVolumeToPseudoatoms | |
| threadOpCode | ProgVolumeToPseudoatoms | |
| threshold | ProgVolumeToPseudoatoms | |
| tryRun() | XmippProgram | virtual |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| useMask | ProgVolumeToPseudoatoms | |
| Vcurrent | ProgVolumeToPseudoatoms | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| Vin | ProgVolumeToPseudoatoms | |
| writeResults() | ProgVolumeToPseudoatoms | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13