absMaxR_vec | ProgVolDeformSph | |
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
analyzeStrain | ProgVolDeformSph | |
applyTransformation | ProgVolDeformSph | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
computeStrain() | ProgVolDeformSph | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgVolDeformSph | virtual |
deformation | ProgVolDeformSph | |
distance(double *pclnm) | ProgVolDeformSph | |
doRun | XmippProgram | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
fillVectorTerms(int l1, int l2) | ProgVolDeformSph | |
fnRoot | ProgVolDeformSph | |
fnVolI | ProgVolDeformSph | |
fnVolOut | ProgVolDeformSph | |
fnVolR | ProgVolDeformSph | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
Gx | ProgVolDeformSph | |
Gy | ProgVolDeformSph | |
Gz | ProgVolDeformSph | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
L1 | ProgVolDeformSph | |
L2 | ProgVolDeformSph | |
lambda | ProgVolDeformSph | |
minimizepos(int l2, Matrix1D< double > &steps) const | ProgVolDeformSph | |
name() const | XmippProgram | |
numCoefficients(int l1, int l2, int &nc) const | ProgVolDeformSph | |
optimizeRadius | ProgVolDeformSph | |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
progDef | XmippProgram | protected |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readParams() | ProgVolDeformSph | virtual |
Rmax | ProgVolDeformSph | |
run() | ProgVolDeformSph | virtual |
runWithoutArgs | XmippProgram | |
saveDeformation | ProgVolDeformSph | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
show() | ProgVolDeformSph | |
XmippProgram::show() const | XmippProgram | virtual |
sigma | ProgVolDeformSph | |
sumVD | ProgVolDeformSph | |
sumVI | ProgVolDeformSph | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
vecSize | ProgVolDeformSph | |
verbose | XmippProgram | |
version() const | XmippProgram | |
VI | ProgVolDeformSph | |
VO | ProgVolDeformSph | |
volumesI | ProgVolDeformSph | |
volumesR | ProgVolDeformSph | |
VR | ProgVolDeformSph | |
writeVector(std::string const &outPath, Matrix1D< double > const &v, bool append) const | ProgVolDeformSph | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
~XmippProgram() | XmippProgram | virtual |