ProgTomographAlignment Member List

This is the complete list of members for ProgTomographAlignment, including all inherited members.

addExampleLine(const char *example, bool verbatim=true)	XmippProgram
addKeywords(const char *keywords)	XmippProgram
addParamsLine(const String &line)	XmippProgram
addParamsLine(const char *line)	XmippProgram
addSeeAlsoLine(const char *seeAlso)	XmippProgram
addUsageLine(const char *line, bool verbatim=false)	XmippProgram
affineTransformations	ProgTomographAlignment
alignImages(const Alignment &alignment)	ProgTomographAlignment
allLandmarksX	ProgTomographAlignment
allLandmarksY	ProgTomographAlignment
argc	XmippProgram	protected
argv	XmippProgram	protected
avgBackwardPatchCorr	ProgTomographAlignment
avgForwardPatchCorr	ProgTomographAlignment
barpi	ProgTomographAlignment
bestPreviousAlignment	ProgTomographAlignment
blindSeqLength	ProgTomographAlignment
checkParam(const char *param)	XmippProgram
clearUsage()	XmippProgram
computeAffineTransformations(bool globalAffineToUse)	ProgTomographAlignment
correlationList	ProgTomographAlignment
corrThreshold	ProgTomographAlignment
debug	XmippProgram
defaultComments	XmippProgram	protected
defineCommons()	XmippProgram	protected
defineParams()	ProgTomographAlignment	virtual
deltaRot	ProgTomographAlignment
difficult	ProgTomographAlignment
doNotIdentifyOutliers	ProgTomographAlignment
dontNormalize	ProgTomographAlignment
doRun	XmippProgram
endProgress()	XmippProgram
errorCode	XmippProgram	protected
existsParam(const char *param)	XmippProgram
fnRoot	ProgTomographAlignment
fnSel	ProgTomographAlignment
fnSelOrig	ProgTomographAlignment
generateLandmarkSet()	ProgTomographAlignment
getCountParam(const char *param)	XmippProgram
getDoubleParam(const char *param, int arg=0)	XmippProgram
getDoubleParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getFloatParam(const char *param, int arg=0)	XmippProgram
getFloatParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getIntParam(const char *param, int arg=0)	XmippProgram
getIntParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getListParam(const char *param, StringVector &list)	XmippProgram
getParam(const char *param, int arg=0)	XmippProgram
getParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getParamDef(const char *param) const	XmippProgram
globalAffine	ProgTomographAlignment
gridSamples	ProgTomographAlignment
identifyOutliers(bool mark)	ProgTomographAlignment
identifyOutliersZ	ProgTomographAlignment
img	ProgTomographAlignment
iMinTilt	ProgTomographAlignment
initComments()	XmippProgram	virtual
initProgress(size_t total, size_t stepBin=60)	XmippProgram
isCapillar	ProgTomographAlignment
isOutlier	ProgTomographAlignment
iteration	ProgTomographAlignment
lastStep	ProgTomographAlignment
localSize	ProgTomographAlignment
maskImg	ProgTomographAlignment
maxIterDE	ProgTomographAlignment
maxShiftPercentage	ProgTomographAlignment
maxStep	ProgTomographAlignment
name() const	XmippProgram
name_list	ProgTomographAlignment
Ncritical	ProgTomographAlignment
ni	ProgTomographAlignment
Nimg	ProgTomographAlignment
numThreads	ProgTomographAlignment
optimizeTiltAngle	ProgTomographAlignment
processDefaultComment(const char *param, const char *left)	XmippProgram
produceInformationFromLandmarks()	ProgTomographAlignment
produceSideInfo()	ProgTomographAlignment
progDef	XmippProgram	protected
psiMax	ProgTomographAlignment
pyramidLevel	ProgTomographAlignment
quit(int exit_code=0) const	XmippProgram	virtual
read(int argc, const char **argv, bool reportErrors=true)	XmippProgram	virtual
read(int argc, char **argv, bool reportErrors=true)	XmippProgram	virtual
read(const String &argumentsLine)	XmippProgram
readLandmarkSet(const FileName &fnLandmark)	ProgTomographAlignment
readParams()	ProgTomographAlignment	virtual
refineChain(LandmarkChain &chain, double &corrChain)	ProgTomographAlignment
refineLandmark(int ii, int jj, const Matrix1D< double > &rii, Matrix1D< double > &rjj, double &maxCorr, bool tryFourier) const	ProgTomographAlignment
refineLandmark(const MultidimArray< double > &pieceii, int jj, Matrix1D< double > &rjj, double actualCorrThreshold, bool reversed, double &maxCorr) const	ProgTomographAlignment
removeOutlierLandmarks(const Alignment &alignment)	ProgTomographAlignment
run()	ProgTomographAlignment	virtual
runWithoutArgs	XmippProgram
seqLength	ProgTomographAlignment
setDefaultComment(const char *param, const char *comment)	XmippProgram
setProgramName(const char *name)	XmippProgram
setProgress(size_t value=0)	XmippProgram
SF	ProgTomographAlignment
SForig	ProgTomographAlignment
show()	ProgTomographAlignment
XmippProgram::show() const	XmippProgram	virtual
showAffine	ProgTomographAlignment
showRefinement	ProgTomographAlignment
thresholdAffine	ProgTomographAlignment
tiltList	ProgTomographAlignment
tryRun()	XmippProgram	virtual
usage(int verb=0) const	XmippProgram	virtual
usage(const String &param, int verb=2)	XmippProgram	virtual
useCriticalPoints	ProgTomographAlignment
verbose	XmippProgram
version() const	XmippProgram
Vseti	ProgTomographAlignment
Vsetj	ProgTomographAlignment
writeLandmarkSet(const FileName &fnLandmark) const	ProgTomographAlignment
writeTransformations(const FileName &fnTransformations) const	ProgTomographAlignment
XmippProgram()	XmippProgram
XmippProgram(int argc, const char **argv)	XmippProgram
~ProgTomographAlignment()	ProgTomographAlignment
~XmippProgram()	XmippProgram	virtual