addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
adjustGray | ProgTomoAlignRefinement | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgTomoAlignRefinement | virtual |
doRun | XmippProgram | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
fn_out | ProgTomoAlignRefinement | |
fn_ref | ProgTomoAlignRefinement | |
fn_sel | ProgTomoAlignRefinement | |
generateAligned | ProgTomoAlignRefinement | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
list_of_assigned | ProgTomoAlignRefinement | |
max_psi_change | ProgTomoAlignRefinement | |
max_rot_change | ProgTomoAlignRefinement | |
max_shift_change | ProgTomoAlignRefinement | |
max_tilt_change | ProgTomoAlignRefinement | |
name() const | XmippProgram | |
predict_angles(size_t i, const FileName &fnImgOut) | ProgTomoAlignRefinement | |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
produce_side_info() | ProgTomoAlignRefinement | |
progDef | XmippProgram | protected |
psi_step | ProgTomoAlignRefinement | |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readParams() | ProgTomoAlignRefinement | virtual |
rot_step | ProgTomoAlignRefinement | |
run() | ProgTomoAlignRefinement | virtual |
runWithoutArgs | XmippProgram | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
shift_step | ProgTomoAlignRefinement | |
show() | ProgTomoAlignRefinement | |
XmippProgram::show() const | XmippProgram | virtual |
tilt_step | ProgTomoAlignRefinement | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
V | ProgTomoAlignRefinement | |
verbose | XmippProgram | |
version() const | XmippProgram | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
~XmippProgram() | XmippProgram | virtual |