Xmipp
v3.23.11-Nereus
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This is the complete list of members for ProgRestoreWithPDBDictionary, including all inherited members.
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
angleThreshold | ProgPDBDictionary | |
approximatePatch(const MultidimArray< double > &lowResolutionPatch, std::vector< size_t > &selectedPatchesIdx, std::vector< double > &weight, Matrix1D< double > &alpha) | ProgPDBDictionary | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
auxPatch | ProgPDBDictionary | |
auxSignature | ProgPDBDictionary | |
canonicalOrientation2D(const MultidimArray< double > &patch, MultidimArray< double > &canonicalPatch, Matrix1D< double > &patchSignature) | ProgPDBDictionary | |
canonicalOrientation3D(const MultidimArray< double > &patch, MultidimArray< double > &canonicalPatch, Matrix1D< double > &patchSignature) | ProgPDBDictionary | |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
constructRotationGroup() | ProgPDBDictionary | |
constructRotationGroup2D() | ProgPDBDictionary | |
constructRotationGroup3D() | ProgPDBDictionary | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgRestoreWithPDBDictionary | virtual |
dictionaryHigh | ProgPDBDictionary | |
dictionaryLow | ProgPDBDictionary | |
dictionarySignature | ProgPDBDictionary | |
doRun | XmippProgram | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
extractPatch(const MultidimArray< double > &V, MultidimArray< double > &patch, int k, int i, int j) | ProgPDBDictionary | |
fnIn | ProgRestoreWithPDBDictionary | |
fnOut | ProgRestoreWithPDBDictionary | |
fnRoot | ProgPDBDictionary | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
insertPatch(MultidimArray< double > &Vhigh, MultidimArray< double > &weightHigh, const MultidimArray< double > &patchHigh, int k, int i, int j, double R2) | ProgPDBDictionary | |
iterations | ProgPDBDictionary | |
lambda | ProgPDBDictionary | |
loadDictionaries() | ProgPDBDictionary | |
mode | ProgPDBDictionary | |
name() const | XmippProgram | |
notInDictionary(const MultidimArray< double > &candidatePatch, MultidimArray< double > &canonicalPatch, Matrix1D< double > &canonicalSignature, size_t &canonicalIdx) | ProgPDBDictionary | |
patchSize | ProgPDBDictionary | |
patchSize_2 | ProgPDBDictionary | |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
progDef | XmippProgram | protected |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readParams() | ProgRestoreWithPDBDictionary | virtual |
reconstructPatch(size_t idxTransf, std::vector< size_t > &selectedPatchesIdx, Matrix1D< double > &alpha, MultidimArray< double > &highResolutionPatch) | ProgPDBDictionary | |
rotationGroup | ProgPDBDictionary | |
run() | ProgRestoreWithPDBDictionary | virtual |
runWithoutArgs | XmippProgram | |
saveDictionaries() const | ProgPDBDictionary | |
selectDictionaryPatches(const MultidimArray< double > &lowResolutionPatch, Matrix1D< double > &lowResolutionPatchSignature, std::vector< size_t > &selectedPatchesIdx, std::vector< double > &weight) | ProgPDBDictionary | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
show() | ProgRestoreWithPDBDictionary | virtual |
XmippProgram::show() const | XmippProgram | virtual |
stdThreshold | ProgPDBDictionary | |
tryRun() | XmippProgram | virtual |
Ui | ProgPDBDictionary | |
UitUi | ProgPDBDictionary | |
Uity | ProgPDBDictionary | |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
v1 | ProgPDBDictionary | |
v2 | ProgPDBDictionary | |
verbose | XmippProgram | |
version() const | XmippProgram | |
wi | ProgPDBDictionary | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
y | ProgPDBDictionary | |
yp | ProgPDBDictionary | |
~XmippProgram() | XmippProgram | virtual |