ProgNmaAlignment Member List

This is the complete list of members for ProgNmaAlignment, including all inherited members.

addExampleLine(const char *example, bool verbatim=true)	XmippProgram
addKeywords(const char *keywords)	XmippProgram
addParamsLine(const String &line)	XmippProgram
addParamsLine(const char *line)	XmippProgram
addSeeAlsoLine(const char *seeAlso)	XmippProgram
addUsageLine(const char *line, bool verbatim=false)	XmippProgram
allow_apply_geo	XmippMetadataProgram	protected
allow_time_bar	XmippMetadataProgram	protected
apply_geo	XmippMetadataProgram
argc	XmippProgram	protected
argv	XmippProgram	protected
baseName	XmippMetadataProgram
bestStage1	ProgNmaAlignment
checkParam(const char *param)	XmippProgram
checkPoint()	XmippMetadataProgram	virtual
clearUsage()	XmippProgram
computeFitness(Matrix1D< double > &trial) const	ProgNmaAlignment
create_empty_stackfile	XmippMetadataProgram	protected
createDeformedPDB(int pyramidLevel) const	ProgNmaAlignment
createWorkFiles()	ProgNmaAlignment	inlineprotectedvirtual
Rerunable::createWorkFiles(bool resume, MetaData *md)	Rerunable	inlineprotectedvirtual
currentImgName	ProgNmaAlignment
currentStage	ProgNmaAlignment
cutoff_LPfilter	ProgNmaAlignment
datatypeOut	XmippMetadataProgram
debug	XmippProgram
decompose_stacks	XmippMetadataProgram	protected
defaultComments	XmippProgram	protected
defineCommons()	XmippProgram	protected
defineLabelParam()	XmippMetadataProgram	protectedvirtual
defineParams()	ProgNmaAlignment	virtual
delete_mdIn	XmippMetadataProgram	protected
delete_output_stack	XmippMetadataProgram	protected
DF_out	ProgNmaAlignment
discrAngStep	ProgNmaAlignment
do_centerPDB	ProgNmaAlignment
do_FilterPDBVol	ProgNmaAlignment
doRun	XmippProgram
each_image_produces_an_output	XmippMetadataProgram	protected
endProgress()	XmippProgram
errorCode	XmippProgram	protected
existsParam(const char *param)	XmippProgram
finishProcessing()	ProgNmaAlignment	virtual
fitness_min	ProgNmaAlignment
fn_in	XmippMetadataProgram
fn_out	XmippMetadataProgram
fnmask	ProgNmaAlignment
fnModeList	ProgNmaAlignment
fnOutDir	ProgNmaAlignment
fnPDB	ProgNmaAlignment
gaussian_DFT_sigma	ProgNmaAlignment
gaussian_Real_sigma	ProgNmaAlignment
get_image_info	XmippMetadataProgram	protected
getCountParam(const char *param)	XmippProgram
getDoubleParam(const char *param, int arg=0)	XmippProgram
getDoubleParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getFileName() const	Rerunable	inlineprotected
getFloatParam(const char *param, int arg=0)	XmippProgram
getFloatParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getImageToProcess(size_t &objId, size_t &objIndex)	XmippMetadataProgram	protectedvirtual
getInputMd()	XmippMetadataProgram	inline
getIntParam(const char *param, int arg=0)	XmippProgram
getIntParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getListParam(const char *param, StringVector &list)	XmippProgram
getOutputMd()	XmippMetadataProgram	inline
getParam(const char *param, int arg=0)	XmippProgram
getParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getParamDef(const char *param) const	XmippProgram
image_label	XmippMetadataProgram	protected
imgSize	ProgNmaAlignment
init()	XmippMetadataProgram	virtual
initComments()	XmippMetadataProgram	protectedvirtual
initProgress(size_t total, size_t stepBin=60)	XmippProgram
input_is_metadata	XmippMetadataProgram	protected
input_is_stack	XmippMetadataProgram	protected
keep_input_columns	XmippMetadataProgram	protected
mdInSize	XmippMetadataProgram
mode	XmippMetadataProgram	protected
MPIversion	ProgNmaAlignment
name() const	XmippProgram
nameTemplate	ProgNmaAlignment
ndimOut	XmippMetadataProgram
numberOfModes	ProgNmaAlignment
oext	XmippMetadataProgram	protected
oextBaseName	XmippMetadataProgram
oroot	XmippMetadataProgram	protected
output_is_stack	XmippMetadataProgram	protected
parameters	ProgNmaAlignment
pathBaseName	XmippMetadataProgram
performCompleteSearch(const FileName &fnRandom, int pyramidLevel) const	ProgNmaAlignment
performContinuousAssignment(const FileName &fnRandom, int pyramidLevel) const	ProgNmaAlignment
postProcess()	XmippMetadataProgram	protectedvirtual
preProcess()	ProgNmaAlignment	virtual
processDefaultComment(const char *param, const char *left)	XmippProgram
processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut)	ProgNmaAlignment	virtual
produces_a_metadata	XmippMetadataProgram	protected
produces_an_output	XmippMetadataProgram	protected
progDef	XmippProgram	protected
ProgNmaAlignment()	ProgNmaAlignment
progVolumeFromPDB	ProgNmaAlignment
projMatch	ProgNmaAlignment
quit(int exit_code=0) const	XmippProgram	virtual
rangen	ProgNmaAlignment
read(int argc, const char **argv, bool reportErrors=true)	XmippProgram	virtual
read(int argc, char **argv, bool reportErrors=true)	XmippProgram	virtual
read(const String &argumentsLine)	XmippProgram
readParams()	ProgNmaAlignment	virtual
remove_disabled	XmippMetadataProgram	protected
Rerunable(const FileName &fn)	Rerunable	inlineprotected
resume	ProgNmaAlignment
run()	XmippMetadataProgram	virtual
runWithoutArgs	XmippProgram
sampling_rate	ProgNmaAlignment
save_metadata_stack	XmippMetadataProgram	protected
setDefaultComment(const char *param, const char *comment)	XmippProgram
setFileName(const FileName &fn)	Rerunable	inlineprotected
setMode(WriteModeMetaData _mode)	XmippMetadataProgram	inline
setProgramName(const char *name)	XmippProgram
setProgress(size_t value=0)	XmippProgram
setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE)	XmippMetadataProgram	virtual
setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const	XmippMetadataProgram
show()	ProgNmaAlignment
XmippMetadataProgram::show() const override	XmippMetadataProgram	protectedvirtual
showProgress()	XmippMetadataProgram	protectedvirtual
sigmaGaussian	ProgNmaAlignment
single_image	XmippMetadataProgram	protected
startProcessing()	XmippMetadataProgram	protectedvirtual
time_bar_done	XmippMetadataProgram	protected
time_bar_size	XmippMetadataProgram	protected
time_bar_step	XmippMetadataProgram	protected
track_origin	XmippMetadataProgram	protected
trial	ProgNmaAlignment
trial_best	ProgNmaAlignment
trustradius_scale	ProgNmaAlignment
tryRead(int argc, const char **argv, bool reportErrors=true)	XmippMetadataProgram	virtual
tryRun()	XmippProgram	virtual
updateBestFit(double fitness)	ProgNmaAlignment
usage(int verb=0) const	XmippProgram	virtual
usage(const String &param, int verb=2)	XmippProgram	virtual
useFixedGaussian	ProgNmaAlignment
verbose	XmippProgram
version() const	XmippProgram
wait()	XmippMetadataProgram	virtual
weight_zero_freq	ProgNmaAlignment
writeImageParameters(const FileName &fnImg)	ProgNmaAlignment	virtual
writeOutput()	XmippMetadataProgram	protectedvirtual
xdimOut	XmippMetadataProgram
XmippMetadataProgram()	XmippMetadataProgram
XmippProgram()	XmippProgram
XmippProgram(int argc, const char **argv)	XmippProgram
ydimOut	XmippMetadataProgram
zdimOut	XmippMetadataProgram
~ProgNmaAlignment()	ProgNmaAlignment
~XmippMetadataProgram()	XmippMetadataProgram	virtual
~XmippProgram()	XmippProgram	virtual