ProgMLTomo Member List

This is the complete list of members for ProgMLTomo, including all inherited members.

A2	ProgMLTomo
addExampleLine(const char *example, bool verbatim=true)	XmippProgram
addKeywords(const char *keywords)	XmippProgram
addParamsLine(const String &line)	XmippProgram
addParamsLine(const char *line)	XmippProgram
addPartialDocfileData(const MultidimArray< double > &data, size_t first, size_t last)	ProgMLTomo	virtual
addSeeAlsoLine(const char *seeAlso)	XmippProgram
addUsageLine(const char *line, bool verbatim=false)	XmippProgram
all_angle_info	ProgMLTomo
all_missing_info	ProgMLTomo
alpha_k	ProgMLTomo
ang_search	ProgMLTomo
AnglesInfoVector typedef	ProgMLTomo
angular_sampling	ProgMLTomo
argc	XmippProgram	protected
argv	XmippProgram	protected
calculateFsc(MultidimArray< double > &M1, MultidimArray< double > &M2, MultidimArray< double > &W1, MultidimArray< double > &W2, MultidimArray< double > &freq, MultidimArray< double > &fsc, double &resolution)	ProgMLTomo
calculatePdfTranslations()	ProgMLTomo
checkConvergence(std::vector< double > &conv)	ProgMLTomo
checkParam(const char *param)	XmippProgram
clearUsage()	XmippProgram
cline	ProgMLTomo
convert_refno_to_stack_position	ProgMLTomo
corrA2	ProgMLTomo
ddim3	ProgMLTomo
debug	XmippProgram
defaultComments	XmippProgram	protected
defineCommons()	XmippProgram	protected
defineParams()	ProgMLTomo	virtual
dim	ProgMLTomo
dim3	ProgMLTomo
do_filter	ProgMLTomo
do_generate_refs	ProgMLTomo
do_impute	ProgMLTomo
do_ini_filter	ProgMLTomo
do_keep_angles	ProgMLTomo
do_limit_psirange	ProgMLTomo
do_mask	ProgMLTomo
do_missing	ProgMLTomo
do_ml	ProgMLTomo
do_only_average	ProgMLTomo
do_perturb	ProgMLTomo
do_sym	ProgMLTomo
docfiledata	ProgMLTomo
dont_align	ProgMLTomo
dont_rotate	ProgMLTomo
doRun	XmippProgram
endProgress()	XmippProgram
eps	ProgMLTomo
errorCode	XmippProgram	protected
existsParam(const char *param)	XmippProgram
expectation(MetaDataVec &MDimg, std::vector< Image< double > > &Iref, int iter, double &LL, double &sumfracweight, std::vector< MultidimArray< double > > &wsumimgs, std::vector< MultidimArray< double > > &wsumweds, double &wsum_sigma_noise, double &wsum_sigma_offset, MultidimArray< double > &sumw)	ProgMLTomo	virtual
expectationSingleImage(MultidimArray< double > &Mimg, int imgno, const int missno, double old_rot, std::vector< Image< double > > &Iref, std::vector< MultidimArray< double > > &wsumimgs, std::vector< MultidimArray< double > > &wsumweds, double &wsum_sigma_noise, double &wsum_sigma_offset, MultidimArray< double > &sumw, double &LL, double &dLL, double &fracweight, double &sumfracweight, double &trymindiff, int &opt_refno, int &opt_angno, Matrix1D< double > &opt_offsets)	ProgMLTomo
fix_fractions	ProgMLTomo
fix_sigma_noise	ProgMLTomo
fix_sigma_offset	ProgMLTomo
fn_doc	ProgMLTomo
fn_frac	ProgMLTomo
fn_mask	ProgMLTomo
fn_missing	ProgMLTomo
fn_ref	ProgMLTomo
fn_root	ProgMLTomo
fn_sel	ProgMLTomo
fn_sym	ProgMLTomo
fourier_imask	ProgMLTomo
fourier_mask	ProgMLTomo
generateInitialReferences()	ProgMLTomo	virtual
getCountParam(const char *param)	XmippProgram
getDoubleParam(const char *param, int arg=0)	XmippProgram
getDoubleParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getFloatParam(const char *param, int arg=0)	XmippProgram
getFloatParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getIntParam(const char *param, int arg=0)	XmippProgram
getIntParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getListParam(const char *param, StringVector &list)	XmippProgram
getMissingRegion(MultidimArray< unsigned char > &Mmeasured, const Matrix2D< double > &A, const int missno)	ProgMLTomo
getParam(const char *param, int arg=0)	XmippProgram
getParam(const char *param, const char *subparam, int arg=0)	XmippProgram
getParamDef(const char *param) const	XmippProgram
hdim	ProgMLTomo
Imask	ProgMLTomo
imgs_id	ProgMLTomo
imgs_missno	ProgMLTomo
imgs_optangno	ProgMLTomo
imgs_optoffsets	ProgMLTomo
imgs_optpsi	ProgMLTomo
imgs_optrefno	ProgMLTomo
imgs_trymindiff	ProgMLTomo
initComments()	XmippProgram	virtual
initProgress(size_t total, size_t stepBin=60)	XmippProgram
Iold	ProgMLTomo
Iref	ProgMLTomo
istart	ProgMLTomo
Iwed	ProgMLTomo
limit_trans	ProgMLTomo
maskSphericalAverageOutside(MultidimArray< double > &Min)	ProgMLTomo
maxConstrainedCorrSingleImage(MultidimArray< double > &Mimg, int imgno, int missno, double old_rot, std::vector< Image< double > > &Iref, std::vector< MultidimArray< double > > &wsumimgs, std::vector< MultidimArray< double > > &wsumweds, MultidimArray< double > &sumw, double &maxCC, double &sumCC, int &opt_refno, int &opt_angno, Matrix1D< double > &opt_offsets)	ProgMLTomo
maximization(std::vector< MultidimArray< double > > &wsumimgs, std::vector< MultidimArray< double > > &wsumweds, double &wsum_sigma_noise, double &wsum_sigma_offset, MultidimArray< double > &sumw, double &sumfracweight, double &sumw_allrefs, std::vector< MultidimArray< double > > &fsc, int iter)	ProgMLTomo
maxres	ProgMLTomo
MDimg	ProgMLTomo
mdimg_contains_angles	ProgMLTomo
MDmissing	ProgMLTomo
MDref	ProgMLTomo
MISSING_CONE enum value	ProgMLTomo
MISSING_PYRAMID enum value	ProgMLTomo
MISSING_WEDGE_X enum value	ProgMLTomo
MISSING_WEDGE_Y enum value	ProgMLTomo
MissingType enum name	ProgMLTomo
Mr2	ProgMLTomo
myFirstImg	ProgMLTomo
myLastImg	ProgMLTomo
mysampling	ProgMLTomo
name() const	XmippProgram
Niter	ProgMLTomo
Niter2	ProgMLTomo
no_SMALLANGLE	ProgMLTomo
noimp_threshold	ProgMLTomo
nr_ang	ProgMLTomo
nr_images_global	ProgMLTomo
nr_images_local	ProgMLTomo
nr_mask_pixels	ProgMLTomo
nr_miss	ProgMLTomo
nr_ref	ProgMLTomo
oridim	ProgMLTomo
P_phi	ProgMLTomo
perturbAngularSampling()	ProgMLTomo
pixel_size	ProgMLTomo
postProcessVolume(Image< double > &Vin, double resolution=-1.)	ProgMLTomo
precalculateA2(std::vector< Image< double > > &Iref)	ProgMLTomo
processDefaultComment(const char *param, const char *left)	XmippProgram
produceSideInfo()	ProgMLTomo	virtual
produceSideInfo2(int nr_vols=1)	ProgMLTomo	virtual
progDef	XmippProgram	protected
psi_sampling	ProgMLTomo
quit(int exit_code=0) const	XmippProgram	virtual
read(int argc, const char **argv, bool reportErrors=true)	XmippProgram	virtual
read(int argc, char **argv, bool reportErrors=true)	XmippProgram	virtual
read(const String &argumentsLine)	XmippProgram
readMissingInfo()	ProgMLTomo
readParams()	ProgMLTomo	virtual
real_mask	ProgMLTomo
real_omask	ProgMLTomo
reg0	ProgMLTomo
reg_current	ProgMLTomo
reg_steps	ProgMLTomo
regF	ProgMLTomo
regularize(int iter)	ProgMLTomo
reScaleVolume(MultidimArray< double > &Min, bool down_scale=true)	ProgMLTomo
run()	ProgMLTomo	virtual
runWithoutArgs	XmippProgram
scale_factor	ProgMLTomo
setDefaultComment(const char *param, const char *comment)	XmippProgram
setNumberOfLocalImages()	ProgMLTomo	virtual
setProgramName(const char *name)	XmippProgram
setProgress(size_t value=0)	XmippProgram
show()	ProgMLTomo
XmippProgram::show() const	XmippProgram	virtual
sigma_noise	ProgMLTomo
sigma_offset	ProgMLTomo
sym_order	ProgMLTomo
symmetry	ProgMLTomo
threads	ProgMLTomo
tilt_range0	ProgMLTomo
tilt_rangeF	ProgMLTomo
transformer	ProgMLTomo
trymindiff_factor	ProgMLTomo
tryRun()	XmippProgram	virtual
usage(int verb=0) const	XmippProgram	virtual
usage(const String &param, int verb=2)	XmippProgram	virtual
verbose	XmippProgram
version() const	XmippProgram
writeOutputFiles(const int iter, std::vector< MultidimArray< double > > &wsumweds, double &sumw_allrefs, double &LL, double &avefracweight, std::vector< double > &conv, std::vector< MultidimArray< double > > &fsc)	ProgMLTomo	virtual
XmippProgram()	XmippProgram
XmippProgram(int argc, const char **argv)	XmippProgram
~XmippProgram()	XmippProgram	virtual