A2 | ProgML2D | |
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addPartialDocfileData(const MultidimArray< double > &data, size_t first, size_t last) | ProgML2D | virtual |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
allowFastOption | ML2DBaseProgram | |
allowIEM | ML2DBaseProgram | |
allowRestart | ML2DBaseProgram | |
allowThreads | ML2DBaseProgram | |
allref_offsets | ProgML2D | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
average_scale | ML2DBaseProgram | |
awakeThreads(ThreadTask task, int start_refno, int load=1) | ProgML2D | |
barrier | ProgML2D | |
barrier2 | ProgML2D | |
barrier3 | ProgML2D | |
bgmean | ProgML2D | |
blocks | ML2DBaseProgram | |
C_fast | ML2DBaseProgram | |
calculatePdfInplane() | ProgML2D | |
checkConvergence() | ML2DBaseProgram | virtual |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
cline | ML2DBaseProgram | |
conv | ML2DBaseProgram | |
correctScaleAverage() | ProgML2D | |
createThreads() | ProgML2D | virtual |
current_block | ML2DBaseProgram | |
current_image | ML2DBaseProgram | |
current_model | ML2DBaseProgram | |
ddim2 | ML2DBaseProgram | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defaultNiter | ML2DBaseProgram | |
defaultRoot | ML2DBaseProgram | |
defaultStartingIter | ML2DBaseProgram | |
defineAdditionalParams(XmippProgram *prog, const char *sectionLine) | ML2DBaseProgram | virtual |
defineBasicParams(XmippProgram *prog) | ML2DBaseProgram | virtual |
defineCommons() | XmippProgram | protected |
defineHiddenParams(XmippProgram *prog) | ML2DBaseProgram | virtual |
defineParams() | ProgML2D | virtual |
destroyThreads() | ProgML2D | virtual |
df | ML2DBaseProgram | |
df2 | ML2DBaseProgram | |
dfsigma2 | ML2DBaseProgram | |
dim | ML2DBaseProgram | |
dim2 | ML2DBaseProgram | |
dLL | ProgML2D | |
do_generate_refs | ML2DBaseProgram | |
do_mirror | ML2DBaseProgram | |
do_ML3D | ML2DBaseProgram | |
do_norm | ML2DBaseProgram | |
do_restart | ML2DBaseProgram | |
docfiledata | ML2DBaseProgram | |
doRun | XmippProgram | |
doThreadESIUpdateRefno() | ProgML2D | |
doThreadExpectationSingleImageRefno() | ProgML2D | |
doThreadPreselectFastSignificantRefno() | ProgML2D | |
doThreadReverseRotateReferenceRefno() | ProgML2D | |
doThreadRotateReferenceRefno() | ProgML2D | |
endIteration() | ML2DBaseProgram | virtual |
endProgress() | XmippProgram | |
eps | ML2DBaseProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
expectation() | ProgML2D | virtual |
expectationSingleImage(Matrix1D< double > &opt_offsets) | ProgML2D | |
F | ML2DBaseProgram | |
factor_nref | ML2DBaseProgram | |
fast_mode | ML2DBaseProgram | |
Fimg_flip | ProgML2D | |
fix_fractions | ML2DBaseProgram | |
fix_sigma_noise | ML2DBaseProgram | |
fix_sigma_offset | ML2DBaseProgram | |
fn_control | ML2DBaseProgram | |
fn_doc | ML2DBaseProgram | |
fn_frac | ML2DBaseProgram | |
fn_img | ML2DBaseProgram | |
fn_oext | ML2DBaseProgram | |
fn_ref | ML2DBaseProgram | |
fn_root | ML2DBaseProgram | |
fn_scratch | ML2DBaseProgram | |
fn_sig | ML2DBaseProgram | |
fracweight | ProgML2D | |
fref | ProgML2D | |
getBaseName(String suffix="", int number=-1) | ProgML2D | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
getThreadRefnoJob(int &refno) | ProgML2D | |
hdim | ML2DBaseProgram | |
img_id | ML2DBaseProgram | |
imgs_bgmean | ML2DBaseProgram | |
imgs_offsets | ML2DBaseProgram | |
imgs_oldphi | ML2DBaseProgram | |
imgs_oldtheta | ML2DBaseProgram | |
imgs_optrefno | ML2DBaseProgram | |
imgs_scale | ML2DBaseProgram | |
imgs_trymindiff | ML2DBaseProgram | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
initSamplingStuff() | ML2DBaseProgram | |
Iold | ML2DBaseProgram | |
iopt_flip | ProgML2D | |
iopt_psi | ProgML2D | |
ioptflip_ref | ProgML2D | |
ioptx | ProgML2D | |
ioptx_ref | ProgML2D | |
iopty | ProgML2D | |
iopty_ref | ProgML2D | |
istart | ML2DBaseProgram | |
iter | ML2DBaseProgram | |
iteration() | ProgML2D | virtual |
limit_rot | ML2DBaseProgram | |
LL | ProgML2D | |
mask | ProgML2D | |
maximization() | ProgML2D | virtual |
maximizeModel(ModelML2D &model) | ProgML2D | |
maxweight | ProgML2D | |
maxweight2 | ProgML2D | |
MDimg | ML2DBaseProgram | |
MDlog | ML2DBaseProgram | |
MDref | ML2DBaseProgram | |
Mimg | ProgML2D | |
mindiff | ProgML2D | |
ML2DBaseProgram() | ML2DBaseProgram | |
model | ML2DBaseProgram | |
Mr2 | ML2DBaseProgram | |
mref | ProgML2D | |
Msignificant | ProgML2D | |
myFirstImg | ML2DBaseProgram | |
mygroup | ProgML2D | |
myLastImg | ML2DBaseProgram | |
mysumimgs | ProgML2D | |
name() const | XmippProgram | |
Niter | ML2DBaseProgram | |
no_iem | ProgML2D | |
nr_flip | ML2DBaseProgram | |
nr_images_global | ML2DBaseProgram | |
nr_images_local | ML2DBaseProgram | |
nr_nomirror_flips | ML2DBaseProgram | |
nr_psi | ML2DBaseProgram | |
old_bgmean | ProgML2D | |
omask | ProgML2D | |
opt_psi | ProgML2D | |
opt_refno | ProgML2D | |
opt_scale | ProgML2D | |
outRefsMd | ML2DBaseProgram | |
P_phi | ML2DBaseProgram | |
pdf_directions | ProgML2D | |
pfs_count | ProgML2D | |
pfs_maxweight | ProgML2D | |
pfs_mindiff | ProgML2D | |
pfs_weight | ProgML2D | |
preselectFastSignificant() | ProgML2D | |
preselectLimitedDirections(double &phi, double &theta) | ProgML2D | |
printModel(const String &msg, const ModelML2D &model) | ProgML2D | virtual |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
produceSideInfo() | ProgML2D | virtual |
produceSideInfo2() | ProgML2D | virtual |
progDef | XmippProgram | protected |
ProgML2D() | ProgML2D | |
psi_max | ML2DBaseProgram | |
psi_step | ML2DBaseProgram | |
quit(int exit_code=0) const | XmippProgram | virtual |
randomizeImagesOrder() | ML2DBaseProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readModel(ModelML2D &model, int block) | ProgML2D | virtual |
readParams() | ProgML2D | virtual |
referenceExclusive | ML2DBaseProgram | |
refno_count | ProgML2D | |
refno_index | ProgML2D | |
refno_load | ProgML2D | |
refno_load_param | ProgML2D | |
refs_per_class | ML2DBaseProgram | |
refw | ProgML2D | |
refw2 | ProgML2D | |
refw_mirror | ProgML2D | |
refwsc2 | ProgML2D | |
reverseRotateReference() | ProgML2D | |
rotateReference() | ProgML2D | |
run() | ML2DBaseProgram | virtual |
runWithoutArgs | XmippProgram | |
save_mem1 | ML2DBaseProgram | |
save_mem2 | ML2DBaseProgram | |
save_mem3 | ML2DBaseProgram | |
search_rot | ML2DBaseProgram | |
seed | ML2DBaseProgram | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setNumberOfLocalImages() | ML2DBaseProgram | virtual |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
show() | ProgML2D | virtual |
ML2DBaseProgram::show() const | XmippProgram | virtual |
sigdim | ProgML2D | |
spectral_signal | ML2DBaseProgram | |
sum_refw | ProgML2D | |
sum_refw2 | ProgML2D | |
sumfracweight | ProgML2D | |
sumw | ProgML2D | |
sumw2 | ProgML2D | |
sumw_allrefs | ProgML2D | |
sumw_mirror | ProgML2D | |
sumw_refpsi | ProgML2D | |
sumwsc | ProgML2D | |
sumwsc2 | ProgML2D | |
th_ids | ProgML2D | |
threads | ML2DBaseProgram | |
threads_d | ProgML2D | |
threadTask | ProgML2D | |
trymindiff | ProgML2D | |
trymindiff_factor | ML2DBaseProgram | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
verbose | XmippProgram | |
version() const | XmippProgram | |
Vtrans | ML2DBaseProgram | |
writeOutputFiles(const ModelML2D &model, OutputType outputType=OUT_FINAL) | ProgML2D | virtual |
wsum_corr | ProgML2D | |
wsum_Mref | ProgML2D | |
wsum_offset | ProgML2D | |
wsum_sc | ProgML2D | |
wsum_sc2 | ProgML2D | |
wsum_sigma_noise | ProgML2D | |
wsum_sigma_offset | ProgML2D | |
wsumimgs | ProgML2D | |
Xi2 | ProgML2D | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
zero_offsets | ML2DBaseProgram | |
~XmippProgram() | XmippProgram | virtual |