absMaxR_vec | ProgForwardZernikeVol | |
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
analyzeStrain | ProgForwardZernikeVol | |
applyTransformation | ProgForwardZernikeVol | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
blob | ProgForwardZernikeVol | |
blob_r | ProgForwardZernikeVol | |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
clnm | ProgForwardZernikeVol | |
computeStrain() | ProgForwardZernikeVol | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgForwardZernikeVol | virtual |
deformation | ProgForwardZernikeVol | |
deformVolume() | ProgForwardZernikeVol | |
distance(double *pclnm) | ProgForwardZernikeVol | |
doRun | XmippProgram | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
fillVectorTerms(int l1, int l2) | ProgForwardZernikeVol | |
fn_sph | ProgForwardZernikeVol | |
fnMaskI | ProgForwardZernikeVol | |
fnMaskR | ProgForwardZernikeVol | |
fnRoot | ProgForwardZernikeVol | |
fnVolI | ProgForwardZernikeVol | |
fnVolOut | ProgForwardZernikeVol | |
fnVolR | ProgForwardZernikeVol | |
gaussianProjectionTable | ProgForwardZernikeVol | |
gaussianProjectionTable2 | ProgForwardZernikeVol | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
Gx | ProgForwardZernikeVol | |
Gy | ProgForwardZernikeVol | |
Gz | ProgForwardZernikeVol | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
L1 | ProgForwardZernikeVol | |
L2 | ProgForwardZernikeVol | |
lambda | ProgForwardZernikeVol | |
loop_step | ProgForwardZernikeVol | |
minimizepos(int L1, int l2, Matrix1D< double > &steps) | ProgForwardZernikeVol | |
name() const | XmippProgram | |
numCoefficients(int l1, int l2, int &vecSize) | ProgForwardZernikeVol | |
optimizeRadius | ProgForwardZernikeVol | |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
progDef | XmippProgram | protected |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readNthLine(int N) const | ProgForwardZernikeVol | |
readParams() | ProgForwardZernikeVol | virtual |
Rmax | ProgForwardZernikeVol | |
rmsd(MultidimArray< double > vol1, MultidimArray< double > vol2, double &val) | ProgForwardZernikeVol | |
run() | ProgForwardZernikeVol | virtual |
runWithoutArgs | XmippProgram | |
saveDeformation | ProgForwardZernikeVol | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
show() | ProgForwardZernikeVol | |
XmippProgram::show() const | XmippProgram | virtual |
sigma4 | ProgForwardZernikeVol | |
splattingAtPos(std::array< double, 3 > r, double weight, MultidimArray< double > &mVO1, MultidimArray< double > &mVO2) | ProgForwardZernikeVol | |
splatVal(std::array< double, 3 > r, double weight, const MultidimArray< double > &mV) | ProgForwardZernikeVol | |
steps_cp | ProgForwardZernikeVol | |
string2vector(std::string const &s) const | ProgForwardZernikeVol | |
sumVD | ProgForwardZernikeVol | |
sumVI | ProgForwardZernikeVol | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
V_mask2 | ProgForwardZernikeVol | |
V_maski | ProgForwardZernikeVol | |
V_maskr | ProgForwardZernikeVol | |
vec | ProgForwardZernikeVol | |
vecSize | ProgForwardZernikeVol | |
verbose | XmippProgram | |
version() const | XmippProgram | |
VI | ProgForwardZernikeVol | |
VI_f | ProgForwardZernikeVol | |
vL1 | ProgForwardZernikeVol | |
vL2 | ProgForwardZernikeVol | |
vM | ProgForwardZernikeVol | |
vN | ProgForwardZernikeVol | |
VO | ProgForwardZernikeVol | |
VO2 | ProgForwardZernikeVol | |
volume2Blobs(MultidimArray< double > &vol, MultidimArray< double > &vol2, const MultidimArray< double > &mV, const MultidimArray< int > &mask) | ProgForwardZernikeVol | |
volume2Mask(MultidimArray< double > &vol, double thr) | ProgForwardZernikeVol | |
VR | ProgForwardZernikeVol | |
VR2 | ProgForwardZernikeVol | |
writeVector(std::string outPath, Matrix1D< double > v, bool append) | ProgForwardZernikeVol | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
~XmippProgram() | XmippProgram | virtual |