| A | ProgForwardZernikeSubtomos | |
| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| algn_params | ProgForwardZernikeSubtomos | |
| allow_apply_geo | XmippMetadataProgram | protected |
| allow_time_bar | XmippMetadataProgram | protected |
| apply_geo | XmippMetadataProgram | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| baseName | XmippMetadataProgram | |
| blob | ProgForwardZernikeSubtomos | |
| blob_r | ProgForwardZernikeSubtomos | |
| checkParam(const char *param) | XmippProgram | |
| checkPoint() | ProgForwardZernikeSubtomos | virtual |
| clearUsage() | XmippProgram | |
| clnm | ProgForwardZernikeSubtomos | |
| correlation | ProgForwardZernikeSubtomos | |
| create_empty_stackfile | XmippMetadataProgram | protected |
| createWorkFiles() | ProgForwardZernikeSubtomos | inlineprotected |
| Rerunable::createWorkFiles(bool resume, MetaData *md) | Rerunable | inlineprotectedvirtual |
| ctf_params | ProgForwardZernikeSubtomos | |
| currentAngle | ProgForwardZernikeSubtomos | |
| currentDefocusU | ProgForwardZernikeSubtomos | |
| currentDefocusV | ProgForwardZernikeSubtomos | |
| datatypeOut | XmippMetadataProgram | |
| debug | XmippProgram | |
| decompose_stacks | XmippMetadataProgram | protected |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineLabelParam() | XmippMetadataProgram | protectedvirtual |
| defineParams() | ProgForwardZernikeSubtomos | virtual |
| deformVol(MultidimArray< double > &mVD, const MultidimArray< double > &mV, double &def, double rot, double tilt, double psi) | ProgForwardZernikeSubtomos | |
| delete_mdIn | XmippMetadataProgram | protected |
| delete_output_stack | XmippMetadataProgram | protected |
| deltaDefocusAngle | ProgForwardZernikeSubtomos | |
| deltaDefocusU | ProgForwardZernikeSubtomos | |
| deltaDefocusV | ProgForwardZernikeSubtomos | |
| deltaPsi | ProgForwardZernikeSubtomos | |
| deltaRot | ProgForwardZernikeSubtomos | |
| deltaTilt | ProgForwardZernikeSubtomos | |
| deltaX | ProgForwardZernikeSubtomos | |
| deltaY | ProgForwardZernikeSubtomos | |
| deltaZ | ProgForwardZernikeSubtomos | |
| df | ProgForwardZernikeSubtomos | |
| Direction enum name | ProgForwardZernikeSubtomos | |
| doRun | XmippProgram | |
| each_image_produces_an_output | XmippMetadataProgram | protected |
| endProgress() | XmippProgram | |
| errorCode | XmippProgram | protected |
| existsParam(const char *param) | XmippProgram | |
| fillVectorTerms(int l1, int l2, Matrix1D< int > &vL1, Matrix1D< int > &vN, Matrix1D< int > &vL2, Matrix1D< int > &vM) | ProgForwardZernikeSubtomos | |
| filter | ProgForwardZernikeSubtomos | |
| FilterCTF | ProgForwardZernikeSubtomos | |
| filterMW | ProgForwardZernikeSubtomos | |
| finishProcessing() | ProgForwardZernikeSubtomos | virtual |
| flagEnabled | ProgForwardZernikeSubtomos | |
| fn_in | XmippMetadataProgram | |
| fn_out | XmippMetadataProgram | |
| fnImage | ProgForwardZernikeSubtomos | |
| fnMaskR | ProgForwardZernikeSubtomos | |
| fnOutDir | ProgForwardZernikeSubtomos | |
| fnVolR | ProgForwardZernikeSubtomos | |
| gaussianProjectionTable | ProgForwardZernikeSubtomos | |
| gaussianProjectionTable2 | ProgForwardZernikeSubtomos | |
| get_image_info | XmippMetadataProgram | protected |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFileName() const | Rerunable | inlineprotected |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
| getInputMd() | XmippMetadataProgram | inline |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getOutputMd() | XmippMetadataProgram | inline |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| hasCTF | ProgForwardZernikeSubtomos | |
| I | ProgForwardZernikeSubtomos | |
| idx_z_clnm | ProgForwardZernikeSubtomos | |
| Ifiltered | ProgForwardZernikeSubtomos | |
| Ifilteredp | ProgForwardZernikeSubtomos | |
| ignoreCTF | ProgForwardZernikeSubtomos | |
| image_label | XmippMetadataProgram | protected |
| init() | XmippMetadataProgram | virtual |
| initComments() | XmippMetadataProgram | protectedvirtual |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| input_is_metadata | XmippMetadataProgram | protected |
| input_is_stack | XmippMetadataProgram | protected |
| keep_input_columns | XmippMetadataProgram | protected |
| L1 | ProgForwardZernikeSubtomos | |
| L2 | ProgForwardZernikeSubtomos | |
| lambda | ProgForwardZernikeSubtomos | |
| loop_step | ProgForwardZernikeSubtomos | |
| mask3D | ProgForwardZernikeSubtomos | |
| maxAngularChange | ProgForwardZernikeSubtomos | |
| maxResol | ProgForwardZernikeSubtomos | |
| maxShift | ProgForwardZernikeSubtomos | |
| mdInSize | XmippMetadataProgram | |
| minimizepos(int L1, int l2, Matrix1D< double > &steps) | ProgForwardZernikeSubtomos | |
| mode | XmippMetadataProgram | protected |
| name() const | XmippProgram | |
| ndimOut | XmippMetadataProgram | |
| num_images | ProgForwardZernikeSubtomos | |
| numCoefficients(int l1, int l2, int &vecSize) | ProgForwardZernikeSubtomos | |
| oext | XmippMetadataProgram | protected |
| oextBaseName | XmippMetadataProgram | |
| old_defocusAngle | ProgForwardZernikeSubtomos | |
| old_defocusU | ProgForwardZernikeSubtomos | |
| old_defocusV | ProgForwardZernikeSubtomos | |
| old_flip | ProgForwardZernikeSubtomos | |
| old_psi | ProgForwardZernikeSubtomos | |
| old_rot | ProgForwardZernikeSubtomos | |
| old_shiftX | ProgForwardZernikeSubtomos | |
| old_shiftY | ProgForwardZernikeSubtomos | |
| old_shiftZ | ProgForwardZernikeSubtomos | |
| old_tilt | ProgForwardZernikeSubtomos | |
| optimizeAlignment | ProgForwardZernikeSubtomos | |
| optimizeDefocus | ProgForwardZernikeSubtomos | |
| optimizeDeformation | ProgForwardZernikeSubtomos | |
| optimizeRadius | ProgForwardZernikeSubtomos | |
| oroot | XmippMetadataProgram | protected |
| output_is_stack | XmippMetadataProgram | protected |
| P | ProgForwardZernikeSubtomos | |
| p | ProgForwardZernikeSubtomos | |
| pathBaseName | XmippMetadataProgram | |
| phaseFlipped | ProgForwardZernikeSubtomos | |
| postProcess() | XmippMetadataProgram | protectedvirtual |
| preComputeDF() | ProgForwardZernikeSubtomos | |
| preProcess() | ProgForwardZernikeSubtomos | virtual |
| prev_clnm | ProgForwardZernikeSubtomos | |
| prior_deformation | ProgForwardZernikeSubtomos | |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgForwardZernikeSubtomos | virtual |
| produces_a_metadata | XmippMetadataProgram | protected |
| produces_an_output | XmippMetadataProgram | protected |
| progDef | XmippProgram | protected |
| ProgForwardZernikeSubtomos() | ProgForwardZernikeSubtomos | |
| quit(int exit_code=0) const | XmippProgram | virtual |
| R | ProgForwardZernikeSubtomos | |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgForwardZernikeSubtomos | virtual |
| remove_disabled | XmippMetadataProgram | protected |
| Rerunable(const FileName &fn) | Rerunable | inlineprotected |
| resume | ProgForwardZernikeSubtomos | |
| Rmax | ProgForwardZernikeSubtomos | |
| RmaxDef | ProgForwardZernikeSubtomos | |
| rotateCoefficients() | ProgForwardZernikeSubtomos | |
| rotatePositions(double rot, double tilt, double psi) | ProgForwardZernikeSubtomos | |
| run() | XmippMetadataProgram | virtual |
| runWithoutArgs | XmippProgram | |
| save_metadata_stack | XmippMetadataProgram | protected |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setFileName(const FileName &fn) | Rerunable | inlineprotected |
| setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
| setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
| show() | ProgForwardZernikeSubtomos | |
| XmippMetadataProgram::show() const override | XmippMetadataProgram | protectedvirtual |
| showOptimization | ProgForwardZernikeSubtomos | |
| showProgress() | XmippMetadataProgram | protectedvirtual |
| sigma4 | ProgForwardZernikeSubtomos | |
| single_image | XmippMetadataProgram | protected |
| splattingAtPos(std::array< double, 3 > r, double weight, MultidimArray< double > &mP, const MultidimArray< double > &mV) | ProgForwardZernikeSubtomos | |
| startProcessing() | XmippMetadataProgram | protectedvirtual |
| steps_cp | ProgForwardZernikeSubtomos | |
| sumV | ProgForwardZernikeSubtomos | |
| t1 | ProgForwardZernikeSubtomos | |
| t2 | ProgForwardZernikeSubtomos | |
| time_bar_done | XmippMetadataProgram | protected |
| time_bar_size | XmippMetadataProgram | protected |
| time_bar_step | XmippMetadataProgram | protected |
| totalDeformation | ProgForwardZernikeSubtomos | |
| track_origin | XmippMetadataProgram | protected |
| transformImageSph(double *pclnm) | ProgForwardZernikeSubtomos | |
| tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
| tryRun() | XmippProgram | virtual |
| Ts | ProgForwardZernikeSubtomos | |
| updateCTFImage(double defocusU, double defocusV, double angle) | ProgForwardZernikeSubtomos | |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| useCTF | ProgForwardZernikeSubtomos | |
| V | ProgForwardZernikeSubtomos | |
| V_mask | ProgForwardZernikeSubtomos | |
| Vdeformed | ProgForwardZernikeSubtomos | |
| vecSize | ProgForwardZernikeSubtomos | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| vL1 | ProgForwardZernikeSubtomos | |
| vL2 | ProgForwardZernikeSubtomos | |
| vM | ProgForwardZernikeSubtomos | |
| vN | ProgForwardZernikeSubtomos | |
| vpos | ProgForwardZernikeSubtomos | |
| wait() | XmippMetadataProgram | virtual |
| weightsInterpolation3D(double x, double y, double z) | ProgForwardZernikeSubtomos | |
| writeImageParameters(MDRow &row) | ProgForwardZernikeSubtomos | virtual |
| writeOutput() | XmippMetadataProgram | protectedvirtual |
| Xdim | ProgForwardZernikeSubtomos | |
| xdimOut | XmippMetadataProgram | |
| XmippMetadataProgram() | XmippMetadataProgram | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ydimOut | XmippMetadataProgram | |
| z_clnm_diff | ProgForwardZernikeSubtomos | |
| zdimOut | XmippMetadataProgram | |
| ~ProgForwardZernikeSubtomos() | ProgForwardZernikeSubtomos | |
| ~XmippMetadataProgram() | XmippMetadataProgram | virtual |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13