| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| allow_apply_geo | XmippMetadataProgram | protected |
| allow_time_bar | XmippMetadataProgram | protected |
| apply_geo | XmippMetadataProgram | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| baseName | XmippMetadataProgram | |
| bestStage1 | ProgFlexibleAlignment | |
| checkParam(const char *param) | XmippProgram | |
| checkPoint() | XmippMetadataProgram | virtual |
| clearUsage() | XmippProgram | |
| costfunctionvalue | ProgFlexibleAlignment | |
| costfunctionvalue_cst | ProgFlexibleAlignment | |
| create_empty_stackfile | XmippMetadataProgram | protected |
| createDeformedPDB() const | ProgFlexibleAlignment | |
| createWorkFiles() | ProgFlexibleAlignment | inlineprotectedvirtual |
| Rerunable::createWorkFiles(bool resume, MetaData *md) | Rerunable | inlineprotectedvirtual |
| currentImgName | ProgFlexibleAlignment | |
| currentStage | ProgFlexibleAlignment | |
| cutoff_LPfilter | ProgFlexibleAlignment | |
| datatypeOut | XmippMetadataProgram | |
| debug | XmippProgram | |
| decompose_stacks | XmippMetadataProgram | protected |
| defampsampling | ProgFlexibleAlignment | |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineLabelParam() | XmippMetadataProgram | protectedvirtual |
| defineParams() | ProgFlexibleAlignment | virtual |
| delete_mdIn | XmippMetadataProgram | protected |
| delete_output_stack | XmippMetadataProgram | protected |
| DF_out | ProgFlexibleAlignment | |
| do_centerPDB | ProgFlexibleAlignment | |
| do_FilterPDBVol | ProgFlexibleAlignment | |
| doRun | XmippProgram | |
| each_image_produces_an_output | XmippMetadataProgram | protected |
| endProgress() | XmippProgram | |
| errorCode | XmippProgram | protected |
| eval() | ProgFlexibleAlignment | |
| existsParam(const char *param) | XmippProgram | |
| finishProcessing() | ProgFlexibleAlignment | virtual |
| fn_in | XmippMetadataProgram | |
| fn_out | XmippMetadataProgram | |
| fnDown | ProgFlexibleAlignment | |
| fnmask | ProgFlexibleAlignment | |
| fnModeList | ProgFlexibleAlignment | |
| fnOutDir | ProgFlexibleAlignment | |
| fnPDB | ProgFlexibleAlignment | |
| gaussian_Real_sigma | ProgFlexibleAlignment | |
| get_image_info | XmippMetadataProgram | protected |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFileName() const | Rerunable | inlineprotected |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
| getInputMd() | XmippMetadataProgram | inline |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getOutputMd() | XmippMetadataProgram | inline |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| image_label | XmippMetadataProgram | protected |
| imgSize | ProgFlexibleAlignment | |
| init() | XmippMetadataProgram | virtual |
| initComments() | XmippMetadataProgram | protectedvirtual |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| input_is_metadata | XmippMetadataProgram | protected |
| input_is_stack | XmippMetadataProgram | protected |
| keep_input_columns | XmippMetadataProgram | protected |
| max_no_iter | ProgFlexibleAlignment | |
| maxdefamp | ProgFlexibleAlignment | |
| maxtransl | ProgFlexibleAlignment | |
| mdInSize | XmippMetadataProgram | |
| minAngularSampling | ProgFlexibleAlignment | |
| mode | XmippMetadataProgram | protected |
| modeList | ProgFlexibleAlignment | |
| MPIversion | ProgFlexibleAlignment | |
| name() const | XmippProgram | |
| nameTemplate | ProgFlexibleAlignment | |
| ndimOut | XmippMetadataProgram | |
| numberOfModes | ProgFlexibleAlignment | |
| oext | XmippMetadataProgram | protected |
| oextBaseName | XmippMetadataProgram | |
| oroot | XmippMetadataProgram | protected |
| output_is_stack | XmippMetadataProgram | protected |
| parameters | ProgFlexibleAlignment | |
| pathBaseName | XmippMetadataProgram | |
| performCompleteSearch(int pyramidLevel) | ProgFlexibleAlignment | |
| performContinuousAssignment(int pyramidLevel) | ProgFlexibleAlignment | |
| postProcess() | XmippMetadataProgram | protectedvirtual |
| preProcess() | ProgFlexibleAlignment | virtual |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgFlexibleAlignment | virtual |
| produces_a_metadata | XmippMetadataProgram | protected |
| produces_an_output | XmippMetadataProgram | protected |
| progDef | XmippProgram | protected |
| ProgFlexibleAlignment() | ProgFlexibleAlignment | |
| projMatch | ProgFlexibleAlignment | |
| quit(int exit_code=0) const | XmippProgram | virtual |
| rangen | ProgFlexibleAlignment | |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgFlexibleAlignment | virtual |
| remove_disabled | XmippMetadataProgram | protected |
| Rerunable(const FileName &fn) | Rerunable | inlineprotected |
| resume | ProgFlexibleAlignment | |
| run() | XmippMetadataProgram | virtual |
| runWithoutArgs | XmippProgram | |
| sampling_rate | ProgFlexibleAlignment | |
| save_metadata_stack | XmippMetadataProgram | protected |
| scale_defamp | ProgFlexibleAlignment | |
| scdefamp | ProgFlexibleAlignment | |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setFileName(const FileName &fn) | Rerunable | inlineprotected |
| setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
| setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
| show() | ProgFlexibleAlignment | |
| XmippMetadataProgram::show() const override | XmippMetadataProgram | protectedvirtual |
| showProgress() | XmippMetadataProgram | protectedvirtual |
| sigma | ProgFlexibleAlignment | |
| sigmaGaussian | ProgFlexibleAlignment | |
| single_image | XmippMetadataProgram | protected |
| startProcessing() | XmippMetadataProgram | protectedvirtual |
| time_bar_done | XmippMetadataProgram | protected |
| time_bar_size | XmippMetadataProgram | protected |
| time_bar_step | XmippMetadataProgram | protected |
| track_origin | XmippMetadataProgram | protected |
| translsampling | ProgFlexibleAlignment | |
| trial | ProgFlexibleAlignment | |
| trial_best | ProgFlexibleAlignment | |
| tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
| tryRun() | XmippProgram | virtual |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| useFixedGaussian | ProgFlexibleAlignment | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| wait() | XmippMetadataProgram | virtual |
| weight_zero_freq | ProgFlexibleAlignment | |
| writeImageParameters(const FileName &fnImg) | ProgFlexibleAlignment | virtual |
| writeOutput() | XmippMetadataProgram | protectedvirtual |
| xdimOut | XmippMetadataProgram | |
| XmippMetadataProgram() | XmippMetadataProgram | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ydimOut | XmippMetadataProgram | |
| zdimOut | XmippMetadataProgram | |
| ~XmippMetadataProgram() | XmippMetadataProgram | virtual |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13