| action | ProgCTFBasicParams | |
| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| adjust | ProgCTFBasicParams | |
| adjust_params | ProgCTFBasicParams | |
| amplitud | ProgCTFBasicParams | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| assignCTFfromParameters(double *p, CTFDescription &ctfmodel, int ia, int l, int modelSimplification) | ProgCTFEstimateFromPSD | |
| assignParametersFromCTF(const CTFDescription &ctfmodel, double *p, int ia, int l, int modelSimplification) | ProgCTFEstimateFromPSD | |
| bootstrap | ProgCTFBasicParams | |
| center_optimization_focus(bool adjust_freq, bool adjust_th, double margin) | ProgCTFEstimateFromPSD | |
| checkParam(const char *param) | XmippProgram | |
| clearUsage() | XmippProgram | |
| compute_central_region(double &w1, double &w2, double ang) | ProgCTFEstimateFromPSD | |
| corr13 | ProgCTFBasicParams | |
| CTF_fitness_object(double *p) | ProgCTFEstimateFromPSD | |
| ctfmodel_defoci | ProgCTFEstimateFromPSD | |
| ctfmodelSize | ProgCTFBasicParams | |
| ctftomodel | ProgCTFBasicParams | |
| current_ctfmodel | ProgCTFEstimateFromPSD | |
| current_penalty | ProgCTFBasicParams | |
| debug | XmippProgram | |
| defaultComments | XmippProgram | protected |
| defineBasicParams(XmippProgram *program) | ProgCTFEstimateFromPSD | static |
| defineCommons() | XmippProgram | protected |
| defineParams() | ProgCTFEstimateFromPSD | virtual |
| defocus_range | ProgCTFBasicParams | |
| doRun | XmippProgram | |
| downsampleFactor | ProgCTFBasicParams | |
| endProgress() | XmippProgram | |
| enhanced_ctftomodel | ProgCTFBasicParams | |
| enhanced_ctftomodel_fullsize | ProgCTFBasicParams | |
| enhanced_weight | ProgCTFBasicParams | |
| errorCode | XmippProgram | protected |
| estimate_background_gauss_parameters() | ProgCTFEstimateFromPSD | |
| estimate_background_gauss_parameters2() | ProgCTFEstimateFromPSD | |
| estimate_background_sqrt_parameters() | ProgCTFEstimateFromPSD | |
| estimate_defoci() | ProgCTFEstimateFromPSD | |
| estimate_defoci_Zernike(const MultidimArray< double > &psdToModelFullSize, double min_freq, double max_freq, double Tm, double kV, double lambdaPhase, int sizeWindowPhase, double &defocusU, double &defocusV, double &ellipseAngle, int verbose) | ProgCTFEstimateFromPSD | |
| estimate_defoci_Zernike() | ProgCTFEstimateFromPSD | |
| estimate_envelope_parameters() | ProgCTFEstimateFromPSD | |
| evaluation_reduction | ProgCTFBasicParams | |
| existsParam(const char *param) | XmippProgram | |
| f | ProgCTFBasicParams | |
| f1 | ProgCTFBasicParams | |
| f2 | ProgCTFBasicParams | |
| fastDefocusEstimate | ProgCTFBasicParams | |
| fn_psd | ProgCTFBasicParams | |
| generate_model_halfplane(int Ydim, int Xdim, MultidimArray< double > &model) | ProgCTFEstimateFromPSD | |
| generate_model_quadrant(int Ydim, int Xdim, MultidimArray< double > &model) | ProgCTFEstimateFromPSD | |
| generateModelSoFar(Image< double > &I, bool apply_log) | ProgCTFEstimateFromPSD | |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| heavy_penalization | ProgCTFBasicParams | |
| initComments() | XmippProgram | virtual |
| initial_ctfmodel | ProgCTFEstimateFromPSD | |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| lambdaPhase | ProgCTFBasicParams | |
| mask | ProgCTFBasicParams | |
| mask_between_zeroes | ProgCTFBasicParams | |
| max_freq | ProgCTFBasicParams | |
| max_freq_psd | ProgCTFBasicParams | |
| max_gauss_freq | ProgCTFBasicParams | |
| min_freq | ProgCTFBasicParams | |
| min_freq_psd | ProgCTFBasicParams | |
| modelSimplification | ProgCTFBasicParams | |
| name() const | XmippProgram | |
| noDefocusEstimate | ProgCTFBasicParams | |
| penalize | ProgCTFBasicParams | |
| penalty | ProgCTFBasicParams | static |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| produceSideInfo() | ProgCTFEstimateFromPSD | |
| ProgCTFBasicParams() | ProgCTFBasicParams | inline |
| ProgCTFEstimateFromPSD() | ProgCTFEstimateFromPSD | inline |
| ProgCTFEstimateFromPSD(const ProgCTFEstimateFromPSDFast *copy) | ProgCTFEstimateFromPSD | |
| progDef | XmippProgram | protected |
| psd_exp_enhanced_radial | ProgCTFBasicParams | |
| psd_exp_enhanced_radial_2 | ProgCTFBasicParams | |
| psd_exp_enhanced_radial_derivative | ProgCTFBasicParams | |
| psd_exp_radial | ProgCTFBasicParams | |
| psd_exp_radial_derivative | ProgCTFBasicParams | |
| psd_fft | ProgCTFBasicParams | |
| psd_theo_radial | ProgCTFBasicParams | |
| psd_theo_radial_derivative | ProgCTFBasicParams | |
| quit(int exit_code=0) const | XmippProgram | virtual |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readBasicParams(XmippProgram *program) | ProgCTFEstimateFromPSD | |
| readParams() | ProgCTFEstimateFromPSD | virtual |
| refineAmplitudeContrast | ProgCTFBasicParams | |
| run() | ProgCTFEstimateFromPSD | virtual |
| runWithoutArgs | XmippProgram | |
| saveIntermediateResults(const FileName &fn_root, bool generate_profiles) | ProgCTFEstimateFromPSD | |
| selfEstimation | ProgCTFBasicParams | |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| show() | ProgCTFBasicParams | |
| XmippProgram::show() const | XmippProgram | virtual |
| show_inf | ProgCTFBasicParams | |
| show_optimization | ProgCTFBasicParams | |
| showFirstDefoci() | ProgCTFEstimateFromPSD | |
| sizeWindowPhase | ProgCTFBasicParams | |
| Tm | ProgCTFBasicParams | |
| tryRun() | XmippProgram | virtual |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| value_th | ProgCTFBasicParams | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| w_contfreq | ProgCTFBasicParams | |
| w_count | ProgCTFBasicParams | |
| w_digfreq | ProgCTFBasicParams | |
| w_digfreq_r | ProgCTFBasicParams | |
| w_digfreq_r_iN | ProgCTFBasicParams | |
| x_contfreq | ProgCTFBasicParams | |
| x_digfreq | ProgCTFBasicParams | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| y_contfreq | ProgCTFBasicParams | |
| y_digfreq | ProgCTFBasicParams | |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13