| A | ProgAngularSphAlignmentGpu | |
| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| allow_apply_geo | XmippMetadataProgram | protected |
| allow_time_bar | XmippMetadataProgram | protected |
| angularAlignGpu | ProgAngularSphAlignmentGpu | |
| apply_geo | XmippMetadataProgram | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| baseName | XmippMetadataProgram | |
| checkParam(const char *param) | XmippProgram | |
| checkPoint() | XmippMetadataProgram | virtual |
| clearUsage() | XmippProgram | |
| clnm | ProgAngularSphAlignmentGpu | |
| correlation | ProgAngularSphAlignmentGpu | |
| create_empty_stackfile | XmippMetadataProgram | protected |
| createWorkFiles() | ProgAngularSphAlignmentGpu | inlineprotectedvirtual |
| Rerunable::createWorkFiles(bool resume, MetaData *md) | Rerunable | inlineprotectedvirtual |
| ctf | ProgAngularSphAlignmentGpu | |
| currentAngle | ProgAngularSphAlignmentGpu | |
| currentDefocusU | ProgAngularSphAlignmentGpu | |
| currentDefocusV | ProgAngularSphAlignmentGpu | |
| datatypeOut | XmippMetadataProgram | |
| debug | XmippProgram | |
| decompose_stacks | XmippMetadataProgram | protected |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineLabelParam() | XmippMetadataProgram | protectedvirtual |
| defineParams() | ProgAngularSphAlignmentGpu | virtual |
| deformVol(MultidimArray< double > &mVD, const MultidimArray< double > &mV, double &def, double rot, double tilt, double psi) | ProgAngularSphAlignmentGpu | |
| delete_mdIn | XmippMetadataProgram | protected |
| delete_output_stack | XmippMetadataProgram | protected |
| device | ProgAngularSphAlignmentGpu | |
| doRun | XmippProgram | |
| each_image_produces_an_output | XmippMetadataProgram | protected |
| endProgress() | XmippProgram | |
| errorCode | XmippProgram | protected |
| existsParam(const char *param) | XmippProgram | |
| fillVectorTerms(int l1, int l2, Matrix1D< int > &vL1, Matrix1D< int > &vN, Matrix1D< int > &vL2, Matrix1D< int > &vM) | ProgAngularSphAlignmentGpu | |
| filter | ProgAngularSphAlignmentGpu | |
| FilterCTF | ProgAngularSphAlignmentGpu | |
| finishProcessing() | ProgAngularSphAlignmentGpu | virtual |
| flagEnabled | ProgAngularSphAlignmentGpu | |
| fn_in | XmippMetadataProgram | |
| fn_out | XmippMetadataProgram | |
| fnMaskR | ProgAngularSphAlignmentGpu | |
| fnOutDir | ProgAngularSphAlignmentGpu | |
| fnVolR | ProgAngularSphAlignmentGpu | |
| get_image_info | XmippMetadataProgram | protected |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFileName() const | Rerunable | inlineprotected |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
| getInputMd() | XmippMetadataProgram | inline |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getOutputMd() | XmippMetadataProgram | inline |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| hasCTF | ProgAngularSphAlignmentGpu | |
| I | ProgAngularSphAlignmentGpu | |
| Ifiltered | ProgAngularSphAlignmentGpu | |
| Ifilteredp | ProgAngularSphAlignmentGpu | |
| ignoreCTF | ProgAngularSphAlignmentGpu | |
| image_label | XmippMetadataProgram | protected |
| init() | XmippMetadataProgram | virtual |
| initComments() | XmippMetadataProgram | protectedvirtual |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| input_is_metadata | XmippMetadataProgram | protected |
| input_is_stack | XmippMetadataProgram | protected |
| Ip | ProgAngularSphAlignmentGpu | |
| keep_input_columns | XmippMetadataProgram | protected |
| L1 | ProgAngularSphAlignmentGpu | |
| L2 | ProgAngularSphAlignmentGpu | |
| lambda | ProgAngularSphAlignmentGpu | |
| mask2D | ProgAngularSphAlignmentGpu | |
| maxAngularChange | ProgAngularSphAlignmentGpu | |
| maxResol | ProgAngularSphAlignmentGpu | |
| maxShift | ProgAngularSphAlignmentGpu | |
| mdInSize | XmippMetadataProgram | |
| minimizepos(int L1, int l2, Matrix1D< double > &steps) | ProgAngularSphAlignmentGpu | |
| mode | XmippMetadataProgram | protected |
| name() const | XmippProgram | |
| ndimOut | XmippMetadataProgram | |
| numCoefficients(int l1, int l2, int &vecSize) | ProgAngularSphAlignmentGpu | |
| oext | XmippMetadataProgram | protected |
| oextBaseName | XmippMetadataProgram | |
| old_defocusAngle | ProgAngularSphAlignmentGpu | |
| old_defocusU | ProgAngularSphAlignmentGpu | |
| old_defocusV | ProgAngularSphAlignmentGpu | |
| old_flip | ProgAngularSphAlignmentGpu | |
| old_psi | ProgAngularSphAlignmentGpu | |
| old_rot | ProgAngularSphAlignmentGpu | |
| old_shiftX | ProgAngularSphAlignmentGpu | |
| old_shiftY | ProgAngularSphAlignmentGpu | |
| old_tilt | ProgAngularSphAlignmentGpu | |
| onesInSteps | ProgAngularSphAlignmentGpu | |
| optimizeAlignment | ProgAngularSphAlignmentGpu | |
| optimizeDefocus | ProgAngularSphAlignmentGpu | |
| optimizeDeformation | ProgAngularSphAlignmentGpu | |
| optimizeRadius | ProgAngularSphAlignmentGpu | |
| oroot | XmippMetadataProgram | protected |
| output_is_stack | XmippMetadataProgram | protected |
| P | ProgAngularSphAlignmentGpu | |
| p | ProgAngularSphAlignmentGpu | |
| pathBaseName | XmippMetadataProgram | |
| phaseFlipped | ProgAngularSphAlignmentGpu | |
| postProcess() | XmippMetadataProgram | protectedvirtual |
| preProcess() | ProgAngularSphAlignmentGpu | virtual |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgAngularSphAlignmentGpu | virtual |
| produces_a_metadata | XmippMetadataProgram | protected |
| produces_an_output | XmippMetadataProgram | protected |
| ProgAngularSphAlignmentGpu() | ProgAngularSphAlignmentGpu | |
| progDef | XmippProgram | protected |
| quit(int exit_code=0) const | XmippProgram | virtual |
| R | ProgAngularSphAlignmentGpu | |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgAngularSphAlignmentGpu | virtual |
| remove_disabled | XmippMetadataProgram | protected |
| Rerunable(const FileName &fn) | Rerunable | inlineprotected |
| resume | ProgAngularSphAlignmentGpu | |
| Rmax | ProgAngularSphAlignmentGpu | |
| RmaxDef | ProgAngularSphAlignmentGpu | |
| run() | XmippMetadataProgram | virtual |
| runWithoutArgs | XmippProgram | |
| save_metadata_stack | XmippMetadataProgram | protected |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setFileName(const FileName &fn) | Rerunable | inlineprotected |
| setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
| setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
| show() const override | ProgAngularSphAlignmentGpu | virtual |
| showOptimization | ProgAngularSphAlignmentGpu | |
| showProgress() | XmippMetadataProgram | protectedvirtual |
| single_image | XmippMetadataProgram | protected |
| startProcessing() | XmippMetadataProgram | protectedvirtual |
| steps_cp | ProgAngularSphAlignmentGpu | |
| sumV | ProgAngularSphAlignmentGpu | |
| sumVd | ProgAngularSphAlignmentGpu | |
| time_bar_done | XmippMetadataProgram | protected |
| time_bar_size | XmippMetadataProgram | protected |
| time_bar_step | XmippMetadataProgram | protected |
| totalDeformation | ProgAngularSphAlignmentGpu | |
| track_origin | XmippMetadataProgram | protected |
| tranformImageSph(double *pclnm, double rot, double tilt, double psi, Matrix2D< double > &A, double deltaDefocusU, double deltaDefocusV, double deltaDefocusAngle) | ProgAngularSphAlignmentGpu | |
| tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
| tryRun() | XmippProgram | virtual |
| Ts | ProgAngularSphAlignmentGpu | |
| updateCTFImage(double defocusU, double defocusV, double angle) | ProgAngularSphAlignmentGpu | |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| useFakeKernel | ProgAngularSphAlignmentGpu | |
| V | ProgAngularSphAlignmentGpu | |
| V_mask | ProgAngularSphAlignmentGpu | |
| Vdeformed | ProgAngularSphAlignmentGpu | |
| vecSize | ProgAngularSphAlignmentGpu | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| vL1 | ProgAngularSphAlignmentGpu | |
| vL2 | ProgAngularSphAlignmentGpu | |
| vM | ProgAngularSphAlignmentGpu | |
| vN | ProgAngularSphAlignmentGpu | |
| wait() | XmippMetadataProgram | virtual |
| writeImageParameters(const FileName &fnImg) | ProgAngularSphAlignmentGpu | virtual |
| writeOutput() | XmippMetadataProgram | protectedvirtual |
| Xdim | ProgAngularSphAlignmentGpu | |
| xdimOut | XmippMetadataProgram | |
| XmippMetadataProgram() | XmippMetadataProgram | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ydimOut | XmippMetadataProgram | |
| zdimOut | XmippMetadataProgram | |
| ~ProgAngularSphAlignmentGpu() | ProgAngularSphAlignmentGpu | |
| ~XmippMetadataProgram() | XmippMetadataProgram | virtual |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13