| A | ProgAngularSphAlignment | |
| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| allow_apply_geo | XmippMetadataProgram | protected |
| allow_time_bar | XmippMetadataProgram | protected |
| apply_geo | XmippMetadataProgram | |
| applyCTFImage(double const &deltaDefocusU, double const &deltaDefocusV, double const &deltaDefocusAngle) | ProgAngularSphAlignment | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| baseName | XmippMetadataProgram | |
| checkParam(const char *param) | XmippProgram | |
| checkPoint() | XmippMetadataProgram | virtual |
| clearUsage() | XmippProgram | |
| clnm | ProgAngularSphAlignment | |
| correlation | ProgAngularSphAlignment | |
| create_empty_stackfile | XmippMetadataProgram | protected |
| createWorkFiles() | ProgAngularSphAlignment | inlineprotectedvirtual |
| Rerunable::createWorkFiles(bool resume, MetaData *md) | Rerunable | inlineprotectedvirtual |
| ctf | ProgAngularSphAlignment | |
| currentAngle | ProgAngularSphAlignment | |
| currentDefocusU | ProgAngularSphAlignment | |
| currentDefocusV | ProgAngularSphAlignment | |
| datatypeOut | XmippMetadataProgram | |
| debug | XmippProgram | |
| decompose_stacks | XmippMetadataProgram | protected |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineLabelParam() | XmippMetadataProgram | protectedvirtual |
| defineParams() | ProgAngularSphAlignment | virtual |
| deformVol(MultidimArray< double > &mVD, const MultidimArray< double > &mV, double &def, double rot, double tilt, double psi) | ProgAngularSphAlignment | |
| delete_mdIn | XmippMetadataProgram | protected |
| delete_output_stack | XmippMetadataProgram | protected |
| doRun | XmippProgram | |
| each_image_produces_an_output | XmippMetadataProgram | protected |
| endProgress() | XmippProgram | |
| errorCode | XmippProgram | protected |
| existsParam(const char *param) | XmippProgram | |
| fillVectorTerms(int l1, int l2) | ProgAngularSphAlignment | |
| filter | ProgAngularSphAlignment | |
| FilterCTF | ProgAngularSphAlignment | |
| finishProcessing() | ProgAngularSphAlignment | virtual |
| flagEnabled | ProgAngularSphAlignment | |
| fn_in | XmippMetadataProgram | |
| fn_out | XmippMetadataProgram | |
| fnMaskR | ProgAngularSphAlignment | |
| fnOutDir | ProgAngularSphAlignment | |
| fnVolR | ProgAngularSphAlignment | |
| get_image_info | XmippMetadataProgram | protected |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFileName() const | Rerunable | inlineprotected |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
| getInputMd() | XmippMetadataProgram | inline |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getOutputMd() | XmippMetadataProgram | inline |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| hasCTF | ProgAngularSphAlignment | |
| I | ProgAngularSphAlignment | |
| Ifiltered | ProgAngularSphAlignment | |
| Ifilteredp | ProgAngularSphAlignment | |
| ignoreCTF | ProgAngularSphAlignment | |
| image_label | XmippMetadataProgram | protected |
| init() | XmippMetadataProgram | virtual |
| initComments() | XmippMetadataProgram | protectedvirtual |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| input_is_metadata | XmippMetadataProgram | protected |
| input_is_stack | XmippMetadataProgram | protected |
| Ip | ProgAngularSphAlignment | |
| keep_input_columns | XmippMetadataProgram | protected |
| L1 | ProgAngularSphAlignment | |
| L2 | ProgAngularSphAlignment | |
| lambda | ProgAngularSphAlignment | |
| mask2D | ProgAngularSphAlignment | |
| maxAngularChange | ProgAngularSphAlignment | |
| maxResol | ProgAngularSphAlignment | |
| maxShift | ProgAngularSphAlignment | |
| mdInSize | XmippMetadataProgram | |
| minimizepos(int l2, Matrix1D< double > &steps) const | ProgAngularSphAlignment | |
| mode | XmippMetadataProgram | protected |
| name() const | XmippProgram | |
| ndimOut | XmippMetadataProgram | |
| numCoefficients(int l1, int l2, int &nc) const | ProgAngularSphAlignment | |
| oext | XmippMetadataProgram | protected |
| oextBaseName | XmippMetadataProgram | |
| old_defocusAngle | ProgAngularSphAlignment | |
| old_defocusU | ProgAngularSphAlignment | |
| old_defocusV | ProgAngularSphAlignment | |
| old_flip | ProgAngularSphAlignment | |
| old_psi | ProgAngularSphAlignment | |
| old_rot | ProgAngularSphAlignment | |
| old_shiftX | ProgAngularSphAlignment | |
| old_shiftY | ProgAngularSphAlignment | |
| old_tilt | ProgAngularSphAlignment | |
| optimizeAlignment | ProgAngularSphAlignment | |
| optimizeDefocus | ProgAngularSphAlignment | |
| optimizeDeformation | ProgAngularSphAlignment | |
| optimizeRadius | ProgAngularSphAlignment | |
| oroot | XmippMetadataProgram | protected |
| output_is_stack | XmippMetadataProgram | protected |
| P | ProgAngularSphAlignment | |
| p | ProgAngularSphAlignment | |
| pathBaseName | XmippMetadataProgram | |
| phaseFlipped | ProgAngularSphAlignment | |
| postProcess() | XmippMetadataProgram | protectedvirtual |
| preProcess() | ProgAngularSphAlignment | virtual |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgAngularSphAlignment | virtual |
| produces_a_metadata | XmippMetadataProgram | protected |
| produces_an_output | XmippMetadataProgram | protected |
| ProgAngularSphAlignment() | ProgAngularSphAlignment | |
| progDef | XmippProgram | protected |
| quit(int exit_code=0) const | XmippProgram | virtual |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgAngularSphAlignment | virtual |
| remove_disabled | XmippMetadataProgram | protected |
| Rerunable(const FileName &fn) | Rerunable | inlineprotected |
| resume | ProgAngularSphAlignment | |
| Rmax | ProgAngularSphAlignment | |
| RmaxDef | ProgAngularSphAlignment | |
| run() | XmippMetadataProgram | virtual |
| runWithoutArgs | XmippProgram | |
| save_metadata_stack | XmippMetadataProgram | protected |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setFileName(const FileName &fn) | Rerunable | inlineprotected |
| setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
| setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
| show() | ProgAngularSphAlignment | |
| XmippMetadataProgram::show() const override | XmippMetadataProgram | protectedvirtual |
| showOptimization | ProgAngularSphAlignment | |
| showProgress() | XmippMetadataProgram | protectedvirtual |
| single_image | XmippMetadataProgram | protected |
| startProcessing() | XmippMetadataProgram | protectedvirtual |
| steps_cp | ProgAngularSphAlignment | |
| sumV | ProgAngularSphAlignment | |
| sumVd | ProgAngularSphAlignment | |
| time_bar_done | XmippMetadataProgram | protected |
| time_bar_size | XmippMetadataProgram | protected |
| time_bar_step | XmippMetadataProgram | protected |
| totalDeformation | ProgAngularSphAlignment | |
| track_origin | XmippMetadataProgram | protected |
| tranformImageSph(double *pclnm, double rot, double tilt, double psi, double deltaDefocusU, double deltaDefocusV, double deltaDefocusAngle) | ProgAngularSphAlignment | |
| tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
| tryRun() | XmippProgram | virtual |
| Ts | ProgAngularSphAlignment | |
| updateCTFImage(double defocusU, double defocusV, double angle) | ProgAngularSphAlignment | |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| V | ProgAngularSphAlignment | |
| V_mask | ProgAngularSphAlignment | |
| Vdeformed | ProgAngularSphAlignment | |
| vecSize | ProgAngularSphAlignment | |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| vL1 | ProgAngularSphAlignment | |
| vL2 | ProgAngularSphAlignment | |
| vM | ProgAngularSphAlignment | |
| vN | ProgAngularSphAlignment | |
| wait() | XmippMetadataProgram | virtual |
| writeImageParameters(const FileName &fnImg) | ProgAngularSphAlignment | virtual |
| writeOutput() | XmippMetadataProgram | protectedvirtual |
| Xdim | ProgAngularSphAlignment | |
| xdimOut | XmippMetadataProgram | |
| XmippMetadataProgram() | XmippMetadataProgram | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ydimOut | XmippMetadataProgram | |
| zdimOut | XmippMetadataProgram | |
| ~ProgAngularSphAlignment() | ProgAngularSphAlignment | |
| ~XmippMetadataProgram() | XmippMetadataProgram | virtual |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13