addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
avail_memory | ProgAngularProjectionMatching | |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
convert_refno_to_stack_position | ProgAngularProjectionMatching | |
counter_refs_in_memory | ProgAngularProjectionMatching | |
debug | XmippProgram | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgAngularProjectionMatching | virtual |
destroyAndClean() | ProgAngularProjectionMatching | |
DFexp | ProgAngularProjectionMatching | |
DFo | ProgAngularProjectionMatching | |
dim | ProgAngularProjectionMatching | |
do_overwrite | ProgAngularProjectionMatching | |
do_scale | ProgAngularProjectionMatching | |
doRun | XmippProgram | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
fn_ctf | ProgAngularProjectionMatching | |
fn_exp | ProgAngularProjectionMatching | |
fn_out | ProgAngularProjectionMatching | |
fn_ref | ProgAngularProjectionMatching | |
fP_img | ProgAngularProjectionMatching | |
fP_ref | ProgAngularProjectionMatching | |
fPm_img | ProgAngularProjectionMatching | |
getCountParam(const char *param) | XmippProgram | |
getCurrentImage(size_t imgid, Image< double > &img) | ProgAngularProjectionMatching | |
getCurrentReference(int refno, Polar_fftw_plans &local_plans) | ProgAngularProjectionMatching | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
global_plans | ProgAngularProjectionMatching | |
ids | ProgAngularProjectionMatching | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
loop_forward_refs | ProgAngularProjectionMatching | |
max_nr_imgs_in_memory | ProgAngularProjectionMatching | |
max_nr_refs_in_memory | ProgAngularProjectionMatching | |
max_shift | ProgAngularProjectionMatching | |
Mctf | ProgAngularProjectionMatching | |
mysampling | ProgAngularProjectionMatching | |
name() const | XmippProgram | |
nr_trans | ProgAngularProjectionMatching | |
numOrientations | ProgAngularProjectionMatching | |
pad | ProgAngularProjectionMatching | |
paddim | ProgAngularProjectionMatching | |
phase_flipped | ProgAngularProjectionMatching | |
pointer_allrefs2refsinmem | ProgAngularProjectionMatching | |
pointer_refsinmem2allrefs | ProgAngularProjectionMatching | |
processAllImages() | ProgAngularProjectionMatching | virtual |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
processSomeImages(const std::vector< size_t > &imagesToProcess) | ProgAngularProjectionMatching | |
produceSideInfo() | ProgAngularProjectionMatching | virtual |
progDef | XmippProgram | protected |
progress_bar_step | ProgAngularProjectionMatching | |
proj_ref | ProgAngularProjectionMatching | |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readParams() | ProgAngularProjectionMatching | virtual |
Ri | ProgAngularProjectionMatching | |
Ro | ProgAngularProjectionMatching | |
rotationallyAlignOneImage(Matrix2D< double > &img, int imgno, int &opt_samplenr, double &opt_psi, bool &opt_flip, double &maxcorr) | ProgAngularProjectionMatching | |
run() | ProgAngularProjectionMatching | virtual |
runWithoutArgs | XmippProgram | |
scale_nsteps | ProgAngularProjectionMatching | |
scale_step | ProgAngularProjectionMatching | |
scaleAlignOneImage(MultidimArray< double > &img, const int &samplenr, const double &psi, const bool &opt_flip, const double &opt_xoff, const double &opt_yoff, const double &old_scale, double &opt_scale, double &maxcorr) | ProgAngularProjectionMatching | |
search5d_shift | ProgAngularProjectionMatching | |
search5d_step | ProgAngularProjectionMatching | |
search5d_xoff | ProgAngularProjectionMatching | |
search5d_yoff | ProgAngularProjectionMatching | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
show() | ProgAngularProjectionMatching | |
XmippProgram::show() const | XmippProgram | virtual |
stddev_img | ProgAngularProjectionMatching | |
stddev_ref | ProgAngularProjectionMatching | |
thread_barrier | ProgAngularProjectionMatching | |
threads | ProgAngularProjectionMatching | |
total_nr_refs | ProgAngularProjectionMatching | |
translationallyAlignOneImage(MultidimArray< double > &img, const int &samplenr, const double &psi, const bool &opt_flip, double &opt_xoff, double &opt_yoff, double &maxcorr) | ProgAngularProjectionMatching | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
verbose | XmippProgram | |
version() const | XmippProgram | |
writeOutputFiles() | ProgAngularProjectionMatching | virtual |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
~XmippProgram() | XmippProgram | virtual |