| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| allow_apply_geo | XmippMetadataProgram | protected |
| allow_time_bar | XmippMetadataProgram | protected |
| apply_geo | XmippMetadataProgram | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| baseName | XmippMetadataProgram | |
| build_ref_candidate_list(const Image< double > &I, bool *candidate_list, std::vector< double > &cumulative_corr, std::vector< double > &sumxy) | ProgAngularDiscreteAssign | |
| checkMirrors | ProgAngularDiscreteAssign | |
| checkParam(const char *param) | XmippProgram | |
| checkPoint() | XmippMetadataProgram | virtual |
| clearUsage() | XmippProgram | |
| create_empty_stackfile | XmippMetadataProgram | protected |
| datatypeOut | XmippMetadataProgram | |
| debug | XmippProgram | |
| decompose_stacks | XmippMetadataProgram | protected |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineLabelParam() | XmippMetadataProgram | protectedvirtual |
| defineParams() | ProgAngularDiscreteAssign | virtual |
| delete_mdIn | XmippMetadataProgram | protected |
| delete_output_stack | XmippMetadataProgram | protected |
| distance_prm | ProgAngularDiscreteAssign | |
| doRun | XmippProgram | |
| each_image_produces_an_output | XmippMetadataProgram | protected |
| endProgress() | XmippProgram | |
| errorCode | XmippProgram | protected |
| evaluate_candidates(const std::vector< double > &vscore, const std::vector< int > &candidate_idx, std::vector< double > &candidate_rate, double weight) | ProgAngularDiscreteAssign | |
| existsParam(const char *param) | XmippProgram | |
| extended_usage | ProgAngularDiscreteAssign | |
| finishProcessing() | XmippMetadataProgram | protectedvirtual |
| fn_in | XmippMetadataProgram | |
| fn_out | XmippMetadataProgram | |
| fn_ref | ProgAngularDiscreteAssign | |
| fn_sym | ProgAngularDiscreteAssign | |
| get_image_info | XmippMetadataProgram | protected |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
| getInputMd() | XmippMetadataProgram | inline |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getOutputMd() | XmippMetadataProgram | inline |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| group_views(const std::vector< double > &vrot, const std::vector< double > &vtilt, const std::vector< double > &vpsi, const std::vector< int > &best_idx, const std::vector< int > &candidate_idx, std::vector< std::vector< int > > &groups) | ProgAngularDiscreteAssign | |
| image_label | XmippMetadataProgram | protected |
| init() | XmippMetadataProgram | virtual |
| initComments() | XmippMetadataProgram | protectedvirtual |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| input_is_metadata | XmippMetadataProgram | protected |
| input_is_stack | XmippMetadataProgram | protected |
| keep_input_columns | XmippMetadataProgram | protected |
| library | ProgAngularDiscreteAssign | |
| library_name | ProgAngularDiscreteAssign | |
| library_power | ProgAngularDiscreteAssign | |
| Mask_no | ProgAngularDiscreteAssign | |
| max_proj_change | ProgAngularDiscreteAssign | |
| max_psi_change | ProgAngularDiscreteAssign | |
| max_shift_change | ProgAngularDiscreteAssign | |
| mdInSize | XmippMetadataProgram | |
| mode | XmippMetadataProgram | protected |
| name() const | XmippProgram | |
| ndimOut | XmippMetadataProgram | |
| oext | XmippMetadataProgram | protected |
| oextBaseName | XmippMetadataProgram | |
| oroot | XmippMetadataProgram | protected |
| output_is_stack | XmippMetadataProgram | protected |
| pathBaseName | XmippMetadataProgram | |
| pick | ProgAngularDiscreteAssign | |
| pick_view(int method, std::vector< std::vector< int > > &groups, std::vector< double > &vscore, const std::vector< int > &candidate_idx, const std::vector< double > &candidate_rates) | ProgAngularDiscreteAssign | |
| postProcess() | ProgAngularDiscreteAssign | virtual |
| predict_rot_tilt_angles(Image< double > &I, double &assigned_rot, double &assigned_tilt, int &best_ref_idx) | ProgAngularDiscreteAssign | |
| preProcess() | ProgAngularDiscreteAssign | virtual |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgAngularDiscreteAssign | virtual |
| produce_library() | ProgAngularDiscreteAssign | |
| produces_a_metadata | XmippMetadataProgram | protected |
| produces_an_output | XmippMetadataProgram | protected |
| ProgAngularDiscreteAssign() | ProgAngularDiscreteAssign | |
| progDef | XmippProgram | protected |
| psi_step | ProgAngularDiscreteAssign | |
| quit(int exit_code=0) const | XmippProgram | virtual |
| read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| read(const String &argumentsLine) | XmippProgram | |
| readParams() | ProgAngularDiscreteAssign | virtual |
| refine_candidate_list_with_correlation(int m, Matrix1D< double > &dwt, bool *candidate_list, std::vector< double > &cumulative_corr, Matrix1D< double > &x_power, std::vector< double > &sumxy, double th=50) | ProgAngularDiscreteAssign | |
| remove_disabled | XmippMetadataProgram | protected |
| rot | ProgAngularDiscreteAssign | |
| run() | XmippMetadataProgram | virtual |
| runWithoutArgs | XmippProgram | |
| save_metadata_stack | XmippMetadataProgram | protected |
| SBNo | ProgAngularDiscreteAssign | |
| SBsize | ProgAngularDiscreteAssign | |
| search5D | ProgAngularDiscreteAssign | |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
| setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
| SF_ref | ProgAngularDiscreteAssign | |
| shift_step | ProgAngularDiscreteAssign | |
| show() | ProgAngularDiscreteAssign | |
| XmippMetadataProgram::show() const override | XmippMetadataProgram | protectedvirtual |
| showProgress() | XmippMetadataProgram | protectedvirtual |
| single_image | XmippMetadataProgram | protected |
| smax | ProgAngularDiscreteAssign | |
| smin | ProgAngularDiscreteAssign | |
| startProcessing() | XmippMetadataProgram | protectedvirtual |
| tell | ProgAngularDiscreteAssign | |
| th_discard | ProgAngularDiscreteAssign | |
| tilt | ProgAngularDiscreteAssign | |
| time_bar_done | XmippMetadataProgram | protected |
| time_bar_size | XmippMetadataProgram | protected |
| time_bar_step | XmippMetadataProgram | protected |
| track_origin | XmippMetadataProgram | protected |
| tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
| tryRun() | XmippProgram | virtual |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| wait() | XmippMetadataProgram | virtual |
| writeOutput() | XmippMetadataProgram | protectedvirtual |
| xdimOut | XmippMetadataProgram | |
| XmippMetadataProgram() | XmippMetadataProgram | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| ydimOut | XmippMetadataProgram | |
| zdimOut | XmippMetadataProgram | |
| ~XmippMetadataProgram() | XmippMetadataProgram | virtual |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13