A | ProgAngularContinuousAssign2 | |
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
allow_apply_geo | XmippMetadataProgram | protected |
allow_time_bar | XmippMetadataProgram | protected |
apply_geo | XmippMetadataProgram | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
baseName | XmippMetadataProgram | |
C | ProgAngularContinuousAssign2 | |
C0 | ProgAngularContinuousAssign2 | |
checkParam(const char *param) | XmippProgram | |
checkPoint() | XmippMetadataProgram | virtual |
clearUsage() | XmippProgram | |
contCost | ProgAngularContinuousAssign2 | |
create_empty_stackfile | XmippMetadataProgram | protected |
ctf | ProgAngularContinuousAssign2 | |
ctfEnvelope | ProgAngularContinuousAssign2 | |
ctfImage | ProgAngularContinuousAssign2 | |
currentAngle | ProgAngularContinuousAssign2 | |
currentDefocusU | ProgAngularContinuousAssign2 | |
currentDefocusV | ProgAngularContinuousAssign2 | |
datatypeOut | XmippMetadataProgram | |
debug | XmippProgram | |
decompose_stacks | XmippMetadataProgram | protected |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineLabelParam() | XmippMetadataProgram | protectedvirtual |
defineParams() | ProgAngularContinuousAssign2 | virtual |
delete_mdIn | XmippMetadataProgram | protected |
delete_output_stack | XmippMetadataProgram | protected |
doRun | XmippProgram | |
E | ProgAngularContinuousAssign2 | |
each_image_produces_an_output | XmippMetadataProgram | protected |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
existsParam(const char *param) | XmippProgram | |
fftE | ProgAngularContinuousAssign2 | |
fftTransformer | ProgAngularContinuousAssign2 | |
filter | ProgAngularContinuousAssign2 | |
finishProcessing() | XmippMetadataProgram | protectedvirtual |
fn_in | XmippMetadataProgram | |
fn_out | XmippMetadataProgram | |
fnProjections | ProgAngularContinuousAssign2 | |
fnResiduals | ProgAngularContinuousAssign2 | |
fnVol | ProgAngularContinuousAssign2 | |
get_image_info | XmippMetadataProgram | protected |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getImageToProcess(size_t &objId, size_t &objIndex) | XmippMetadataProgram | protectedvirtual |
getInputMd() | XmippMetadataProgram | inline |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getOutputMd() | XmippMetadataProgram | inline |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
hasCTF | ProgAngularContinuousAssign2 | |
I | ProgAngularContinuousAssign2 | |
Ifiltered | ProgAngularContinuousAssign2 | |
Ifilteredp | ProgAngularContinuousAssign2 | |
ignoreCTF | ProgAngularContinuousAssign2 | |
image_label | XmippMetadataProgram | protected |
iMask2Dsum | ProgAngularContinuousAssign2 | |
init() | XmippMetadataProgram | virtual |
initComments() | XmippMetadataProgram | protectedvirtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
input_is_metadata | XmippMetadataProgram | protected |
input_is_stack | XmippMetadataProgram | protected |
Ip | ProgAngularContinuousAssign2 | |
Istddev | ProgAngularContinuousAssign2 | |
keep_input_columns | XmippMetadataProgram | protected |
mask2D | ProgAngularContinuousAssign2 | |
maxA | ProgAngularContinuousAssign2 | |
maxAngularChange | ProgAngularContinuousAssign2 | |
maxB | ProgAngularContinuousAssign2 | |
maxDefocusChange | ProgAngularContinuousAssign2 | |
maxResol | ProgAngularContinuousAssign2 | |
maxScale | ProgAngularContinuousAssign2 | |
maxShift | ProgAngularContinuousAssign2 | |
mdInSize | XmippMetadataProgram | |
mode | XmippMetadataProgram | protected |
name() const | XmippProgram | |
ndimOut | XmippMetadataProgram | |
oext | XmippMetadataProgram | protected |
oextBaseName | XmippMetadataProgram | |
old_defocusAngle | ProgAngularContinuousAssign2 | |
old_defocusU | ProgAngularContinuousAssign2 | |
old_defocusV | ProgAngularContinuousAssign2 | |
old_flip | ProgAngularContinuousAssign2 | |
old_grayA | ProgAngularContinuousAssign2 | |
old_grayB | ProgAngularContinuousAssign2 | |
old_psi | ProgAngularContinuousAssign2 | |
old_rot | ProgAngularContinuousAssign2 | |
old_shiftX | ProgAngularContinuousAssign2 | |
old_shiftY | ProgAngularContinuousAssign2 | |
old_tilt | ProgAngularContinuousAssign2 | |
optimizeAngles | ProgAngularContinuousAssign2 | |
optimizeDefocus | ProgAngularContinuousAssign2 | |
optimizeGrayValues | ProgAngularContinuousAssign2 | |
optimizeScale | ProgAngularContinuousAssign2 | |
optimizeShift | ProgAngularContinuousAssign2 | |
originalImageLabel | ProgAngularContinuousAssign2 | |
oroot | XmippMetadataProgram | protected |
output_is_stack | XmippMetadataProgram | protected |
P | ProgAngularContinuousAssign2 | |
pad | ProgAngularContinuousAssign2 | |
pathBaseName | XmippMetadataProgram | |
phaseFlipped | ProgAngularContinuousAssign2 | |
postProcess() | ProgAngularContinuousAssign2 | virtual |
preProcess() | ProgAngularContinuousAssign2 | virtual |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
processImage(const FileName &fnImg, const FileName &fnImgOut, const MDRow &rowIn, MDRow &rowOut) | ProgAngularContinuousAssign2 | virtual |
produces_a_metadata | XmippMetadataProgram | protected |
produces_an_output | XmippMetadataProgram | protected |
ProgAngularContinuousAssign2() | ProgAngularContinuousAssign2 | |
progDef | XmippProgram | protected |
projector | ProgAngularContinuousAssign2 | |
quit(int exit_code=0) const | XmippProgram | virtual |
rank | ProgAngularContinuousAssign2 | |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readParams() | ProgAngularContinuousAssign2 | virtual |
remove_disabled | XmippMetadataProgram | protected |
Rmax | ProgAngularContinuousAssign2 | |
run() | XmippMetadataProgram | virtual |
runWithoutArgs | XmippProgram | |
sameDefocus | ProgAngularContinuousAssign2 | |
save_metadata_stack | XmippMetadataProgram | protected |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setMode(WriteModeMetaData _mode) | XmippMetadataProgram | inline |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
setup(MetaData *md, const FileName &o="", const FileName &oroot="", bool applyGeo=false, MDLabel label=MDL_IMAGE) | XmippMetadataProgram | virtual |
setupRowOut(const FileName &fnImgIn, const MDRow &rowIn, const FileName &fnImgOut, MDRow &rowOut) const | XmippMetadataProgram | |
show() | ProgAngularContinuousAssign2 | |
XmippMetadataProgram::show() const override | XmippMetadataProgram | protectedvirtual |
showProgress() | XmippMetadataProgram | protectedvirtual |
single_image | XmippMetadataProgram | protected |
startProcessing() | ProgAngularContinuousAssign2 | virtual |
time_bar_done | XmippMetadataProgram | protected |
time_bar_size | XmippMetadataProgram | protected |
time_bar_step | XmippMetadataProgram | protected |
track_origin | XmippMetadataProgram | protected |
tryRead(int argc, const char **argv, bool reportErrors=true) | XmippMetadataProgram | virtual |
tryRun() | XmippProgram | virtual |
Ts | ProgAngularContinuousAssign2 | |
updateCTFImage(double defocusU, double defocusV, double angle) | ProgAngularContinuousAssign2 | |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
verbose | XmippProgram | |
version() const | XmippProgram | |
wait() | XmippMetadataProgram | virtual |
writeOutput() | XmippMetadataProgram | protectedvirtual |
Xdim | ProgAngularContinuousAssign2 | |
xdimOut | XmippMetadataProgram | |
XmippMetadataProgram() | XmippMetadataProgram | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
ydimOut | XmippMetadataProgram | |
zdimOut | XmippMetadataProgram | |
~ProgAngularContinuousAssign2() | ProgAngularContinuousAssign2 | |
~XmippMetadataProgram() | XmippMetadataProgram | virtual |
~XmippProgram() | XmippProgram | virtual |